Jatropha Genome Database
- JcCB0191441.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0191441.10 + phase: 0
(456 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
30147.m014187 40S ribosomal protein S13, putative 375 e-103
30174.m008862 40S ribosomal protein S13, putative 246 1e-64
30190.m011019 40S ribosomal protein S13, putative 129 2e-29
29813.m001467 conserved hypothetical protein 70 1e-11
>30147.m014187 40S ribosomal protein S13, putative
Length = 339
Score = 375 bits (189), Expect = e-103
Identities = 284/313 (90%), Gaps = 2/313 (0%)
Strand = Plus / Plus
Query: 1 atgggtcgtatgcacagtcgcggtaagggtatttctgcttcggctctgccttacaagagg 60
|||||||||||||||||||||||||||||||| || ||||| ||| |||||||||||||
Sbjct: 1 atgggtcgtatgcacagtcgcggtaagggtatctcggcttcagctttgccttacaagaga 60
Query: 61 actcccccaagctggctcaagatctctgctcaggatgttgaggataacatttgcaaattt 120
|| || ||||| ||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct: 61 acaccaccaagttggctcaagatctcttctcaggatgttgaggagaacatttgcaaattt 120
Query: 121 gcgaagaaggggcttactccttctcagattggtgtcattcttcgtgattctcatggtatt 180
|| |||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||
Sbjct: 121 gcaaagaaggggcttactccttctcagattggtgtaattctccgtgattctcacggtatt 180
Query: 181 gctcaggtgaggagtgtcactggaaacaagattttgcgcatccttaaggctcatggtctt 240
||||| || |||||||| ||||| | ||| || ||||| ||||| |||||||||||||||
Sbjct: 181 gctcaagttaggagtgttactggtagcaaaatcttgcgtatcctcaaggctcatggtctt 240
Query: 241 gcccctgaaattcctgaggatttgtatcatctcatcaagaaggctgttgcaattaggaag 300
|| ||||||||||||||||||||||| ||||| |||||||||||||| || |||| ||||
Sbjct: 241 gcgcctgaaattcctgaggatttgtaccatcttatcaagaaggctgtagc-atta-gaag 298
Query: 301 catttggagagga 313
|||||||||||||
Sbjct: 299 catttggagagga 311
>30174.m008862 40S ribosomal protein S13, putative
Length = 456
Score = 246 bits (124), Expect = 1e-64
Identities = 370/452 (81%)
Strand = Plus / Plus
Query: 1 atgggtcgtatgcacagtcgcggtaagggtatttctgcttcggctctgccttacaagagg 60
||||| || ||||||||| | ||||||||||| || || || ||| |||| ||||||||
Sbjct: 1 atgggacgcatgcacagtagaggtaagggtatatcggcatctgctttgccctacaagaga 60
Query: 61 actcccccaagctggctcaagatctctgctcaggatgttgaggataacatttgcaaattt 120
|| || || || ||||| ||||| ||| ||||||||||||| || ||||||||||| |||
Sbjct: 61 acgccgcctagttggcttaagatttcttctcaggatgttgatgagaacatttgcaagttt 120
Query: 121 gcgaagaaggggcttactccttctcagattggtgtcattcttcgtgattctcatggtatt 180
|||||||| || | | || ||||| |||||||| || ||||||||||||||||| |||
Sbjct: 121 gcgaagaaaggtttgagaccgtctcaaattggtgttatccttcgtgattctcatgggatt 180
Query: 181 gctcaggtgaggagtgtcactggaaacaagattttgcgcatccttaaggctcatggtctt 240
||||| |||| |||||| ||||| | |||||||||||| || || |||||||| || |||
Sbjct: 181 gctcaagtgaagagtgttactggcagcaagattttgcgtatactgaaggctcacggactt 240
Query: 241 gcccctgaaattcctgaggatttgtatcatctcatcaagaaggctgttgcaattaggaag 300
|| ||||| || || || |||||||| || ||||||||||| || |||||||||||||||
Sbjct: 241 gctcctgagatcccagaagatttgtaccacctcatcaagaaagcagttgcaattaggaag 300
Query: 301 catttggagaggaacagaaaagataaggattccaagttcaggttgatccttgtagagagc 360
||||||||||||||||| || ||||| |||||||| || |||||||| | || ||||||
Sbjct: 301 catttggagaggaacaggaaggataaagattccaaatttaggttgattttggttgagagc 360
Query: 361 cggattcacaggcttgctcgatactacaagaaaacgaagaagctacctcctgtttggaaa 420
|||| || | | || || || |||||||| || |||||||| || || || ||||||
Sbjct: 361 aggatccatcgcttagcacgctattacaagaagacaaagaagcttccaccagtatggaaa 420
Query: 421 tacgagtcaaccactgctagcacacttgtggc 452
|| || ||||| || || ||||| ||||||||
Sbjct: 421 tatgaatcaactacagccagcacccttgtggc 452
>30190.m011019 40S ribosomal protein S13, putative
Length = 249
Score = 129 bits (65), Expect = 2e-29
Identities = 194/237 (81%)
Strand = Plus / Plus
Query: 1 atgggtcgtatgcacagtcgcggtaagggtatttctgcttcggctctgccttacaagagg 60
|||||||| |||||||||||||||||||||||||| ||||| || || || ||||| |
Sbjct: 1 atgggtcgaatgcacagtcgcggtaagggtatttccgcttctgcccttccctacaaacgc 60
Query: 61 actcccccaagctggctcaagatctctgctcaggatgttgaggataacatttgcaaattt 120
||||| ||||||||||| || ||||| |||| || || ||||| ||||| ||||| |||
Sbjct: 61 actcctccaagctggctaaaaatctcctctcaagacgtagaggagaacatctgcaagttt 120
Query: 121 gcgaagaaggggcttactccttctcagattggtgtcattcttcgtgattctcatggtatt 180
|| ||||| ||||| || || ||||| |||||||| || || ||||| ||||| ||||||
Sbjct: 121 gcaaagaaagggctaacaccgtctcaaattggtgttatcctccgtgactctcacggtatt 180
Query: 181 gctcaggtgaggagtgtcactggaaacaagattttgcgcatccttaaggctcatggt 237
|| ||||| | || || ||||||| ||||||| | ||||| || || |||||||||
Sbjct: 181 gcccaggtcaaaagcgtaactggaagcaagattctccgcattctcaaagctcatggt 237
>29813.m001467 conserved hypothetical protein
Length = 309
Score = 69.9 bits (35), Expect = 1e-11
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 148 attggtgtcattcttcgtgattctcatggtattgctcaggtgaggagtgtcactggaaac 207
|||||||| || ||||||||||||||||| |||||||| |||| |||||| ||| | | |
Sbjct: 193 attggtgttatccttcgtgattctcatgggattgctcaagtgaagagtgttacttgcagc 252
Query: 208 aagattttgcg 218
|||||||||||
Sbjct: 253 aagattttgcg 263