Jatropha Genome Database
- JcCB0190531.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0190531.10 - phase: 0 /partial
(497 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29308.m000180 RNA polymerase II transcription factor B subunit, ... 371 e-102
29908.m006174 hypothetical protein 66 2e-10
>29308.m000180 RNA polymerase II transcription factor B subunit,
putative
Length = 801
Score = 371 bits (187), Expect = e-102
Identities = 295/331 (89%)
Strand = Plus / Plus
Query: 167 atatacaacgggtctttcgttcaggaccactcaatcctcagcctcgaattttgtgtttgc 226
||||||| ||| | ||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct: 395 atatacagcggatttttcgttcaggaccacttcatcctcagcctcgtattttgtgtttgc 454
Query: 227 agggatctccagacggacctgaacaatatgttgcagtaatgaatgcaatattctctgctc 286
||||||||||||| || ||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 455 agggatctccagatgggcctgaacaatatgttgcagtaatgaattcgatattctctgctc 514
Query: 287 aacgctcgatggtccctatagactcttgttatgttggttctcacaattcagccttcctcc 346
||||||| ||||| |||||||| ||||||||||||||| ||| ||||||||||| || |
Sbjct: 515 aacgctctatggtacctatagattcttgttatgttggtggtcataattcagcctttctgc 574
Query: 347 agcaggcttcttacataactggaggtgtatatgttaaacctcaacatttggatgggctgt 406
||||||||||||| || |||||||||||||||||||| ||||||||||| |||||||| |
Sbjct: 575 agcaggcttcttatattactggaggtgtatatgttaagcctcaacatttagatgggctct 634
Query: 407 ttcagtatttggtgactgtatttgcaactgacttgcattgtcgcagcttcttgcaacttc 466
|||| ||||| |||||||| ||||| || |||||||||| ||| |||||||| ||||| |
Sbjct: 635 ttcaatatttagtgactgtgtttgcgacggacttgcattctcgtagcttcttacaactcc 694
Query: 467 ccaggcctgctggtgttgattttcgtgcatc 497
| |||||||| ||||| ||||| ||||||||
Sbjct: 695 ctaggcctgcgggtgtggatttccgtgcatc 725
Score = 151 bits (76), Expect = 5e-36
Identities = 133/152 (87%)
Strand = Plus / Plus
Query: 1 atggtgttattggacactaatccgtttttctggaccacttcttctctcctgttttcccaa 60
||||||||||| ||||||||||| || ||||||||||||||||| || | ||||| |||
Sbjct: 49 atggtgttattagacactaatccattcttctggaccacttcttcacttccattttctcaa 108
Query: 61 tttctctctcacgtgcttgcatttttgaactccattttgctgcttaatcaactgaaccaa 120
||| | ||||| || ||||||||||||||||| ||||||||||||||||| || ||||||
Sbjct: 109 tttttatctcatgtacttgcatttttgaactcgattttgctgcttaatcagctaaaccaa 168
Query: 121 gtagtggtgattgctactgggtataattcatg 152
|||||||| || |||| ||| |||||||||||
Sbjct: 169 gtagtggtcatagctaatggatataattcatg 200
>29908.m006174 hypothetical protein
Length = 480
Score = 65.9 bits (33), Expect = 2e-10
Identities = 78/93 (83%)
Strand = Plus / Plus
Query: 76 cttgcatttttgaactccattttgctgcttaatcaactgaaccaagtagtggtgattgct 135
||||| ||||||||||| ||||||||| ||||||| || | ||||||| |||| || | |
Sbjct: 16 cttgcgtttttgaactcgattttgctgtttaatcagctaagccaagtattggtcataggt 75
Query: 136 actgggtataattcatgcaactatgtttacgat 168
| ||| ||||||||||| | ||||||||||||
Sbjct: 76 agtggatataattcatgtgattatgtttacgat 108
Score = 54.0 bits (27), Expect = 8e-07
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 301 cctatagactcttgttatgttggttctcacaattcagccttcctccagcag 351
|||||||| ||||||||||||||| ||| ||||||||||| || ||||||
Sbjct: 334 cctatagattcttgttatgttggtggtcataattcagcctttctgcagcag 384