Jatropha Genome Database

JcCB0189561.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0189561.10 + phase: 0 /partial
         (384 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29263.m000092 conserved hypothetical protein                          293   4e-79

>29263.m000092 conserved hypothetical protein
          Length = 1215

 Score =  293 bits (148), Expect = 4e-79
 Identities = 286/332 (86%)
 Strand = Plus / Plus

                                                                        
Query: 1    ggcctcatcgggcaatatgcagtacctattctagaagagaaatctgtttggggaacagat 60
            ||||| || |||||||||||||||||||| |||||||||||||| ||||||||||| |||
Sbjct: 709  ggcctaattgggcaatatgcagtacctatactagaagagaaatcggtttggggaaccgat 768

                                                                        
Query: 61   gcacccacaaggattgcttacatggacacccaggatatagcacgattgacatttatagca 120
            || || ||||| |||||||| |||||||||||||||||||| ||  |||| |||||||||
Sbjct: 769  gccccaacaagaattgcttatatggacacccaggatatagctcgcctgacgtttatagca 828

                                                                        
Query: 121  ttgcgaaatgagagcataaatgggaagcttctcactttcgccggtcctcgagcatggaca 180
             |||| |||||||   | |||||||| || || ||||| || ||||||||||| ||||||
Sbjct: 829  ctgcggaatgagaatgttaatgggaaactgcttacttttgcgggtcctcgagcgtggaca 888

                                                                        
Query: 181  acccaagaggtcatcacattgtgtgaaaggctggcagggcaggatgcaaatgttaccaca 240
            || ||||||||||| |||||||| |||||||| ||||||||||||||||||||||| || 
Sbjct: 889  actcaagaggtcattacattgtgcgaaaggcttgcagggcaggatgcaaatgttactact 948

                                                                        
Query: 241  gttccagtttcgatcttaagattaacccgtcaactgactcggatttttgagtggacaaat 300
            || || ||||| || ||| |||| || |||||||| || ||| ||||||| |||||||||
Sbjct: 949  gtgcctgtttcaattttacgatttactcgtcaactaacacggttttttgaatggacaaat 1008

                                            
Query: 301  gatgttgctgatagattggcattttcggaggt 332
            |||||||| |||||  |||||||||| |||||
Sbjct: 1009 gatgttgcagataggctggcattttcagaggt 1040