Jatropha Genome Database

JcCB0188331.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0188331.10 + phase: 2 /pseudo/partial
         (418 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29908.m006240 conserved hypothetical protein                          252   1e-66
30142.m000632 Rho GTPase activator, putative                           58   4e-08

>29908.m006240 conserved hypothetical protein
          Length = 2943

 Score =  252 bits (127), Expect = 1e-66
 Identities = 184/203 (90%)
 Strand = Plus / Plus

                                                                       
Query: 65  gtcaaggtggaaggaatcttgcggcaagctgcagctgttgatgatgttaagcatcgaatt 124
           |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 685 gtcaaggtagaaggaatcttgcggcaagctgcagctgttgatgatgttgagcatcgaatt 744

                                                                       
Query: 125 cgggaatatgaacaaggaaaaacagagttcgctgcagacgaagacgcacatgtgattggt 184
           || ||||| |||||||| | |||||||||| | ||||  ||||| ||||||||||||| |
Sbjct: 745 cgagaatacgaacaagggagaacagagttctcggcaggggaagatgcacatgtgattgct 804

                                                                       
Query: 185 gattgtgtcaagtatttcctccgtgagttgccatcgtctccagtccctgcatcttgctgc 244
           ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 805 gattgtgtcaagtattttctccgtgagttgccatcctctccagtccctgcatcttgctgc 864

                                  
Query: 245 aatgcactgctacaatcatttcg 267
           || ||| | ||| || |||||||
Sbjct: 865 aaggcattactagaagcatttcg 887


>30142.m000632 Rho GTPase activator, putative
          Length = 2466

 Score = 58.0 bits (29), Expect = 4e-08
 Identities = 80/97 (82%)
 Strand = Plus / Plus

                                                                       
Query: 159 cagacgaagacgcacatgtgattggtgattgtgtcaagtatttcctccgtgagttgccat 218
           |||| ||||| || |||||  ||| ||||||||||||| || ||||  | |||||||| |
Sbjct: 515 cagatgaagatgctcatgttgttgctgattgtgtcaagcatgtcctaagggagttgcctt 574

                                                
Query: 219 cgtctccagtccctgcatcttgctgcaatgcactgct 255
           | |||||||| || ||||||||||||| |||| ||||
Sbjct: 575 cctctccagttccggcatcttgctgcactgcattgct 611