Jatropha Genome Database

JcCB0186651.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0186651.10 - phase: 0 
         (1062 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30167.m000856 conserved hypothetical protein                          117   1e-25
29738.m001041 conserved hypothetical protein                           54   2e-06

>30167.m000856 conserved hypothetical protein
          Length = 1185

 Score =  117 bits (59), Expect = 1e-25
 Identities = 122/143 (85%)
 Strand = Plus / Plus

                                                                       
Query: 331 aagaaagatagacatagcaagattcacacatcacaaggtcttagagatcggagagtcaga 390
           |||||| |||| || |||||||||  |||| | |||||| | |||||||||||||| |||
Sbjct: 280 aagaaacataggcacagcaagatttgcacagctcaaggtttaagagatcggagagtgaga 339

                                                                       
Query: 391 ttatctatccaaatcgctcgtaaatttttcgatcttcaagacatgctagggtttgataaa 450
           || || ||| |||| ||||| || || || |||||||| ||  |||||||||||||||||
Sbjct: 340 ttgtccatcgaaattgctcgaaagttctttgatcttcaggatttgctagggtttgataaa 399

                                  
Query: 451 gcaagtaaaaccctagaatggtt 473
           |||||||||||||||||||||||
Sbjct: 400 gcaagtaaaaccctagaatggtt 422



 Score = 69.9 bits (35), Expect = 3e-11
 Identities = 62/71 (87%)
 Strand = Plus / Plus

                                                                        
Query: 937  aattgggaaattaataatgcaattgcacgatcaagcttctgtgctatcaccaacatgaat 996
            |||||||| ||||||| |||||||||||| || ||||| ||||| || ||||||||||||
Sbjct: 1072 aattgggacattaatagtgcaattgcacgctccagcttttgtgccattaccaacatgaat 1131

                       
Query: 997  agatctgcagg 1007
             || |||||||
Sbjct: 1132 cgacctgcagg 1142



 Score = 56.0 bits (28), Expect = 4e-07
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                   
Query: 691 gcaagagcaagagcaagagaaagaacaagaattaaaatgt 730
           ||||||| |||||||||||||||||| ||| |||||||||
Sbjct: 661 gcaagagaaagagcaagagaaagaactagagttaaaatgt 700


>29738.m001041 conserved hypothetical protein
          Length = 1350

 Score = 54.0 bits (27), Expect = 2e-06
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 688 aaggcaagagcaagagcaagagaaagaacaa 718
           |||||||||||||||||||| ||||||||||
Sbjct: 793 aaggcaagagcaagagcaagggaaagaacaa 823