Jatropha Genome Database

JcCB0186071.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0186071.10 - phase: 0 
         (204 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29838.m001690 mads box protein, putative                              139   7e-33
30174.m008934 mads box protein, putative                               54   3e-07
30138.m003939 mads box protein, putative                               52   1e-06

>29838.m001690 mads box protein, putative
          Length = 186

 Score =  139 bits (70), Expect = 7e-33
 Identities = 142/166 (85%)
 Strand = Plus / Plus

                                                                       
Query: 20  agatcaagaaaattgataatattacagcaaggcaagtgaccttttcgaagagaagacgag 79
           |||||||||| |||||||| || |||||||| |||||||| ||||| ||||||||| |||
Sbjct: 20  agatcaagaagattgataacataacagcaagacaagtgactttttcaaagagaagaagag 79

                                                                       
Query: 80  ggcttttcaagaaagctgaggagctttctgttctttgcgatgctgaggttgctcttatcg 139
           ||||||||||||||||| | || || ||   |||||| ||||||||| | |||||| | |
Sbjct: 80  ggcttttcaagaaagcttatgaactatcaactctttgtgatgctgagatagctcttttag 139

                                                         
Query: 140 ttttttctgctactgggaagctatttgagtattctagctccaggta 185
           | |||||||||||||| ||||| ||||||||| ||||||| |||||
Sbjct: 140 tcttttctgctactggaaagctttttgagtatgctagctctaggta 185


>30174.m008934 mads box protein, putative
          Length = 735

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                          
Query: 91  aaagctgaggagctttctgttctttgcgatgctgaggttgctcttat 137
           |||||| | ||||| ||||| ||||| ||||||||||||||||||||
Sbjct: 91  aaagcttatgagctgtctgtgctttgtgatgctgaggttgctcttat 137


>30138.m003939 mads box protein, putative
          Length = 735

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                     
Query: 106 tctgttctttgcgatgctgaggttgctcttatcgttttttct 147
           |||||||||||||||||||| |||||| | || |||||||||
Sbjct: 106 tctgttctttgcgatgctgaagttgctttgattgttttttct 147