Jatropha Genome Database

JcCB0185581.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0185581.10 + phase: 0 /partial
         (795 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29644.m000185 tRNA-dihydrouridine synthase, putative                  500   e-141

>29644.m000185 tRNA-dihydrouridine synthase, putative
          Length = 1281

 Score =  500 bits (252), Expect = e-141
 Identities = 474/548 (86%)
 Strand = Plus / Plus

                                                                       
Query: 247 aatggagaatctagggtggagcgggcatgggctcactggacaaagttgggtcgacccaaa 306
           |||||||| || |||||||| |||||||||||||||||||  ||| | |||  ||| || 
Sbjct: 217 aatggagagtccagggtggaccgggcatgggctcactggaataagattggtaaaccgaag 276

                                                                       
Query: 307 ttgattgtggctccgatggtggacaattctgagttgccgtttcgaatgctctgtagaaag 366
           ||  | || ||||| ||||| || ||||||||  | || ||||||||||| || ||||||
Sbjct: 277 ttattagtagctccaatggtagataattctgaacttccttttcgaatgctttgcagaaag 336

                                                                       
Query: 367 tatggggctgaggctgcttatactccgatgttgcattctaggatttttactgagaatgag 426
           ||||| ||||| |||||||||||||| ||||| |||||| | ||||||||||||||||| 
Sbjct: 337 tatggcgctgatgctgcttatactcctatgttacattctcgaatttttactgagaatgaa 396

                                                                       
Query: 427 aaatatcgagaccaggaatttacaacttgcaaggaggatcgcccattatttgtccaattt 486
           || || ||   ||| |||||||| ||||| || |||||||||||||||||||||||||||
Sbjct: 397 aagtaccgtacccaagaatttaccacttgtaacgaggatcgcccattatttgtccaattt 456

                                                                       
Query: 487 tgtgccaatgatccagaaatcttattggaagctgcaaggagggtggaaccttattgtgat 546
           ||||| ||||| ||||| ||  |||| ||||||||||||| |||||| ||||||||||||
Sbjct: 457 tgtgctaatgacccagacattctattagaagctgcaaggaaggtggagccttattgtgat 516

                                                                       
Query: 547 tatgttgacattaatctcgggtgtcctcagcggattgccaggaggggcaactatggagct 606
           || ||||| || ||||| |||||||||||||||||||||||| |||| || || || |||
Sbjct: 517 tacgttgatatcaatcttgggtgtcctcagcggattgccaggcgggggaattacggggct 576

                                                                       
Query: 607 ttcttaatggataaacttccacttgtcaaatccttagttgaaaagttgactctaaacctt 666
           |||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 577 ttcttaatggataatcttccacttgttaaatccttagttgaaaagttggctctaaacctt 636

                                                                       
Query: 667 aatgttccagtttcctgcaaaatccgagtgttcccgaagttagaagatactattaattat 726
           ||||| || || || |||||||||||| | |||||||| ||||| |||||||| | ||||
Sbjct: 637 aatgtccctgtgtcttgcaaaatccgactattcccgaaattagatgatactatcagttat 696

                                                                       
Query: 727 gctagaatgctggaagaagctggttgttctcttttggctgtccatggccgaactagagat 786
           |||||||||||||| |||||||||||||||||||| ||||| ||||| ||||||||||||
Sbjct: 697 gctagaatgctggaggaagctggttgttctcttttagctgttcatgggcgaactagagat 756

                   
Query: 787 gagaaaga 794
           ||||||||
Sbjct: 757 gagaaaga 764