Jatropha Genome Database
- JcCB0183081.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0183081.10 + phase: 0 /partial
(811 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29842.m003633 homeobox protein, putative 688 0.0
29600.m000538 homeobox protein, putative 194 6e-49
30174.m008969 homeobox protein, putative 52 5e-06
>29842.m003633 homeobox protein, putative
Length = 2184
Score = 688 bits (347), Expect = 0.0
Identities = 664/770 (86%), Gaps = 6/770 (0%)
Strand = Plus / Plus
Query: 48 tatgaccccaaagagctctgagaatgaactggcgaagctgaaagatgatgattgtgag-- 105
|||||| || ||||||||||| |||||| | | ||| || ||||||||||||| |||
Sbjct: 42 tatgacgcccaagagctctgaaaatgaattagggaatcttaaagatgatgattatgatca 101
Query: 106 ----accaaatccggcactgaaaccactgaagctccttccggagatgatcaagatcctaa 161
|||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 102 tgaaaccaaatcaggcactgagaccactgaagctccttcaggagatgatcaagatcctaa 161
Query: 162 ccagcgccctaaaaagaaacgttatcaccgccacacccagcgacaaatccaagagatgga 221
||| || ||||||||||||||||| |||||||| |||||||| |||||||| || |||||
Sbjct: 162 ccaacgtcctaaaaagaaacgttaccaccgccatacccagcgccaaatccaggaaatgga 221
Query: 222 agctttcttcaaagagtgtcctcacccagatgataagcaacggaaggagttgagccgtga 281
|||||||||||| || || ||||| || || ||||||||||| ||||| ||||||||||
Sbjct: 222 agctttcttcaaggaatgccctcatcctgacgataagcaacgaaaggaactgagccgtga 281
Query: 282 attagggttagagcctctgcaagtcaagttttggttccagaacaagcgtacacaaatgaa 341
||||||||||||||| ||||||| || |||||||| ||||||||||| |||||||||||
Sbjct: 282 attagggttagagccattgcaagtaaaattttggtttcagaacaagcgcacacaaatgaa 341
Query: 342 ggctcaacatgaacgaacagaaaattcaattttgaagtctgagaatgaaaaacttcgtgc 401
|||||||||||||||| ||| ||||||||| ||||| |||| ||||| |||||||||||
Sbjct: 342 ggctcaacatgaacgacaagagaattcaattctgaaggctgaaaatgagaaacttcgtgc 401
Query: 402 ggagaatagtaggtataaggaagcccttggtaatgcctcatgccctaactgtggtggccc 461
||||| | |||||| ||||||||| | ||||||||||||||||||| || ||||| ||
Sbjct: 402 agagaacaataggtacaaggaagccttaagtaatgcctcatgccctaattgcggtggacc 461
Query: 462 agcagctcttggtgagatgtcttttgatgagcagcatttgaggattgagaatgctcgttt 521
|||| | |||||||| || || ||||||||||| ||||||||||| ||||||||||||||
Sbjct: 462 agcaacccttggtgaaatttcctttgatgagcaacatttgaggatcgagaatgctcgttt 521
Query: 522 aagagaagagattgacaggatatctggaattgctgcaaagtatgtggggaagcctttatc 581
||||||||||||||| ||| ||||||||||||| || || ||| | || || || ||||
Sbjct: 522 aagagaagagattgataggttatctggaattgcagccaaatatattggcaaacccatatc 581
Query: 582 ttctttgtctcatcttccttcccatttatcttcaaggtctcttgatcttggagttagcaa 641
||||||||| |||||| | || |||||| ||||| | |||||||| ||||||||||||||
Sbjct: 582 ttctttgtcccatctttcgtctcatttaccttcacgatctcttgaccttggagttagcaa 641
Query: 642 ttttggagcacaaccgggctttgtgggagaaatgtatggagctactgatcttttgagatc 701
||| ||| | ||| |||||| ||| |||||||||||||||||||||||| || | |||||
Sbjct: 642 tttcggaacgcaatcgggctatgtaggagaaatgtatggagctactgattttctaagatc 701
Query: 702 aatcaccggccctactgaggcagaaaagcctatgatagttgaacttgcagttgcagcaat 761
|||||| || |||||||| ||||| ||||| ||||| ||||||||||| |||||||||||
Sbjct: 702 aatcactgggcctactgaagcagagaagccaatgattgttgaacttgctgttgcagcaat 761
Query: 762 ggaggaactaatgagaatggcgcaggcgggagaacccttgtgggttcctg 811
||| ||||||||||||||||| || || ||||| || |||||||||||||
Sbjct: 762 ggaagaactaatgagaatggctcaagcaggagacccattgtgggttcctg 811
>29600.m000538 homeobox protein, putative
Length = 2196
Score = 194 bits (98), Expect = 6e-49
Identities = 299/364 (82%), Gaps = 4/364 (1%)
Strand = Plus / Plus
Query: 172 aaaaagaaacgttatcaccgccacacccagcgacaaatccaagagatggaagctttcttc 231
|||||||| ||||| || ||||| || |||| || |||||||| |||||||||||||||
Sbjct: 178 aaaaagaagcgttaccatcgccatacgcagcatcagatccaagaaatggaagctttcttc 237
Query: 232 aaagagtgtcctcacccagatgataagcaacggaaggagttgagccgtgaattagggtta 291
||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 238 aaagagtgtccgcacccagatgacaagcaacggaaggagctgagccgtgaattagggtta 297
Query: 292 gagcctctgcaagtcaagttttggttccagaacaagcgtacacaaatgaaggctcaacat 351
|| || |||||||||| ||||||||||| ||||| || || || |||||| |||| |||
Sbjct: 298 gaaccattgcaagtcaaattttggttccaaaacaaacgcacccagatgaagactcagcat 357
Query: 352 gaacg--aacagaaaattcaattttgaagtctgagaatgaaaaacttcgtgcggagaata 409
|| || | | || | || || ||| ||||||||||||| ||| | || || ||||
Sbjct: 358 gagcgccatgaaaacacacagcttcgaa--ctgagaatgaaaagcttagggccgacaata 415
Query: 410 gtaggtataaggaagcccttggtaatgcctcatgccctaactgtggtggcccagcagctc 469
|||||| ||||| ||| | || ||||| || ||||| |||||||||||| | |||
Sbjct: 416 tgaggtatcgagaagctcttagcaacgcctcttgtcctaattgtggtggcccaactgcta 475
Query: 470 ttggtgagatgtcttttgatgagcagcatttgaggattgagaatgctcgtttaagagaag 529
||||||| |||||||||||||| || ||||||||| | || |||||| | ||||||||||
Sbjct: 476 ttggtgaaatgtcttttgatgaacatcatttgaggctcgaaaatgctagattaagagaag 535
Query: 530 agat 533
||||
Sbjct: 536 agat 539
>30174.m008969 homeobox protein, putative
Length = 2478
Score = 52.0 bits (26), Expect = 5e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 485 ttgatgagcagcatttgaggattgagaatgctcg 518
|||| ||||||||||| |||||||||||||||||
Sbjct: 677 ttgaagagcagcatttaaggattgagaatgctcg 710