Jatropha Genome Database

JcCB0176661.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0176661.20 + phase: 0 
         (582 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30131.m006989 conserved hypothetical protein                           98   7e-20

>30131.m006989 conserved hypothetical protein
          Length = 585

 Score = 97.6 bits (49), Expect = 7e-20
 Identities = 133/161 (82%)
 Strand = Plus / Plus

                                                                       
Query: 208 tacgacggcgtgataggtggaaaagtatcaggtcggaagtggaagcaagcaaggaaacaa 267
           ||||||||||| ||||  |||| ||  || || ||||||||||| ||||  || || || 
Sbjct: 217 tacgacggcgtaatagcaggaagagcgtcggggcggaagtggaaacaagtgagaaagcag 276

                                                                       
Query: 268 agagcgtcggcgaaactggtgagcattaagggcacgacgttcgaggagagagagcgacag 327
           |||||||||||||| |  |||||| | || |||||||||||||||||||| ||  | |||
Sbjct: 277 agagcgtcggcgaagcacgtgagcgtaaaaggcacgacgttcgaggagagggaaaggcag 336

                                                    
Query: 328 aaggagataaagagagcgtatagggaaagaatgaatgagtt 368
           ||||||||||||| ||||||||| || ||||| ||||||||
Sbjct: 337 aaggagataaagaaagcgtatagagagagaattaatgagtt 377



 Score = 85.7 bits (43), Expect = 3e-16
 Identities = 55/59 (93%)
 Strand = Plus / Plus

                                                                     
Query: 1  atggcttgcactatcgatttccgatgcctcgatgaaggcttcggcggcaaaacctacaa 59
          |||||||| ||||||||||||||||| ||||| ||||||||||| ||||||||||||||
Sbjct: 1  atggcttgtactatcgatttccgatgtctcgacgaaggcttcggaggcaaaacctacaa 59