Jatropha Genome Database

JcCB0175111.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0175111.10 + phase: 0 /partial
         (387 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30169.m006312 hypothetical protein                                     86   2e-16
27996.m000153 DNA binding protein, putative                            64   6e-10

>30169.m006312 hypothetical protein
          Length = 255

 Score = 85.7 bits (43), Expect = 2e-16
 Identities = 64/71 (90%)
 Strand = Plus / Plus

                                                                       
Query: 115 atgaacacagctgagatgcttcaagctgcttacaagtatgtcaaatacttgcaggctcaa 174
           ||||| |||||||||||||||||||||||||  || |||||||||||||||||||| |||
Sbjct: 1   atgaatacagctgagatgcttcaagctgcttttaaatatgtcaaatacttgcaggcccaa 60

                      
Query: 175 cttggcgttct 185
            ||||| ||||
Sbjct: 61  gttggcattct 71



 Score = 61.9 bits (31), Expect = 3e-09
 Identities = 64/75 (85%)
 Strand = Plus / Plus

                                                                       
Query: 225 cataaaagaactgcaaattcttggatctgcctcatttcaagagaagctatacatgcagga 284
           ||||||||||||| |||| || | ||||||   | ||||||||||||||||| || ||||
Sbjct: 114 cataaaagaactggaaatcctggcatctgcaggaattcaagagaagctatacttggagga 173

                          
Query: 285 gaagtgcttggttcc 299
           ||||||| |||||||
Sbjct: 174 gaagtgcctggttcc 188


>27996.m000153 DNA binding protein, putative
          Length = 867

 Score = 63.9 bits (32), Expect = 6e-10
 Identities = 59/68 (86%)
 Strand = Plus / Plus

                                                                       
Query: 112 aagatgaacacagctgagatgcttcaagctgcttacaagtatgtcaaatacttgcaggct 171
           ||||||||||| ||||| ||||||||| ||||||  || |||||||| | ||||||||||
Sbjct: 577 aagatgaacactgctgaaatgcttcaatctgcttctaactatgtcaagttcttgcaggct 636

                   
Query: 172 caacttgg 179
           ||| ||||
Sbjct: 637 caagttgg 644