Jatropha Genome Database

JcCB0175021.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0175021.10 + phase: 0 /pseudo
         (394 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29168.m000387 cyclin d, putative                                      297   3e-80

>29168.m000387 cyclin d, putative
          Length = 1161

 Score =  297 bits (150), Expect = 3e-80
 Identities = 290/336 (86%), Gaps = 3/336 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtcactgccgtgctccgattgcttcaccgaccttctctgcagcgaggattcctccgaa 60
           ||||||||| ||||||||||||||||||  ||||||||||||||||| || || ||||||
Sbjct: 118 atgtcactgtcgtgctccgattgcttcaatgaccttctctgcagcgaagactcttccgaa 177

                                                                       
Query: 61  atattctccgc---tgagtcaccggaatgctcatcggacctcgaatctccggcttttatc 117
           || || ||| |   ||| |||||||||| ||| |||||||| |||||||| ||    | |
Sbjct: 178 atcttttccaccggtgactcaccggaatactcgtcggaccttgaatctcctgccggaacc 237

                                                                       
Query: 118 gaagaatctattgccagtttcattgaagatgaaagaaatttcgtgcctggtttcgattac 177
           | |||||| |||||||||||||| || || || || || ||||| ||||| |||||||| 
Sbjct: 238 gtagaatccattgccagtttcatcgaggacgagaggaacttcgtccctggattcgattat 297

                                                                       
Query: 178 ttgtctcggttccaatctcgctctctcgatgcatcggctcgagaagaatctgttgcatgg 237
           |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 298 ttgtctcgcttccaatctcgctctctcgatgcatcggctcgagaagattctgttgcatgg 357

                                                                       
Query: 238 attctcaaggtgcaagcatactatagtttccaaccgttgacggcgtatctttccgtcaac 297
           |||||||| |||||| |||| ||||| ||||| || ||||| |||||||| |||||||||
Sbjct: 358 attctcaaagtgcaaacatattatagattccagccattgaccgcgtatctctccgtcaac 417

                                               
Query: 298 tatttggatcggtttctttattctcgtccattgccg 333
           ||||||||||||||||| || |||||| ||||||||
Sbjct: 418 tatttggatcggtttctctactctcgttcattgccg 453