Jatropha Genome Database

JcCB0172651.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0172651.10 + phase: 2 /partial
         (517 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29656.m000473 cell cycle checkpoint protein rad17, putative           287   3e-77

>29656.m000473 cell cycle checkpoint protein rad17, putative
          Length = 1320

 Score =  287 bits (145), Expect = 3e-77
 Identities = 295/345 (85%)
 Strand = Plus / Plus

                                                                        
Query: 1    aaggccaattgctgattttctgcatgaaaatgttttagactttataagtgatgaagcaat 60
            ||||||||||||||||||||| ||||||||||||||||| ||||||||||| || |||||
Sbjct: 798  aaggccaattgctgattttctacatgaaaatgttttagattttataagtgacgacgcaat 857

                                                                        
Query: 61   ggatgctgccaaagatgtggcttcatatttaagtgattcagatttgcttatttcctcttt 120
            ||||||| |     ||||||||||||||||||||||| |||| |||||| |||| |||||
Sbjct: 858  ggatgctactgggaatgtggcttcatatttaagtgatgcagacttgcttctttcttcttt 917

                                                                        
Query: 121  ccgtggaatcttggccagatataatgaggcagagagcgttcttcaatcagctgctgcttc 180
             || ||||| ||||  |||| ||||||||||||||| |||||||||||||||||||| ||
Sbjct: 918  tcgaggaatgttggttagatgtaatgaggcagagagtgttcttcaatcagctgctgcatc 977

                                                                        
Query: 181  agttgctgttcgtggtgtgttgtttggaaattctcatccttcgccttccaggtggcatgc 240
            ||||||||||||||| || || |||||||||||||||||||| |||||||||||||||||
Sbjct: 978  agttgctgttcgtggcgtattatttggaaattctcatccttcaccttccaggtggcatgc 1037

                                                                        
Query: 241  cattcgcagaccaaaactttggcaagtggaacaatcacttttgcttaaccaaaaagagac 300
             |||||||| ||||| || ||||| |  | ||||||| | ||||  || ||||||| || 
Sbjct: 1038 tattcgcaggccaaagctatggcaggctggacaatcaatgttgcggaatcaaaaagcgat 1097

                                                         
Query: 301  cataagccaaaggcttactgtttatggtggatccagcttctctaa 345
              ||||||| || ||||  | | |||||||||||||||| |||||
Sbjct: 1098 gttaagccagagacttatagctaatggtggatccagcttttctaa 1142