Jatropha Genome Database

JcCB0171281.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0171281.10 + phase: 0 /pseudo/partial
         (330 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m014289 tetracycline transporter, putative                      161   3e-39

>30170.m014289 tetracycline transporter, putative
          Length = 1329

 Score =  161 bits (81), Expect = 3e-39
 Identities = 159/185 (85%)
 Strand = Plus / Plus

                                                                        
Query: 88   cagggcaaggctcaaggatgcatttcaggcataggttcatttgccaatgtcgtgtctcct 147
            ||||| ||||||||||||| | |||||||  | || || || |||||||| || || || 
Sbjct: 1087 cagggaaaggctcaaggattcgtttcaggtttgggctcgttagccaatgtggtttcgccc 1146

                                                                        
Query: 148  ttgctgttctctcctttaacagctctgttcctatctgaaagagcaccattccatttccct 207
            ||| | |||||||||||||||||| |||||||||| |||||||||||||| || ||||||
Sbjct: 1147 ttggttttctctcctttaacagctttgttcctatccgaaagagcaccatttcacttccct 1206

                                                                        
Query: 208  ggtttcagtatcatgtgcgctggattcacctcgatgatagccttgattcagagtatcatg 267
            ||||||||||| ||||| | ||||||  ||||||||||||||||||| |||||||| |||
Sbjct: 1207 ggtttcagtattatgtgtgttggatttgcctcgatgatagccttgatccagagtatgatg 1266

                 
Query: 268  atgag 272
            |||||
Sbjct: 1267 atgag 1271