Jatropha Genome Database
- JcCB0164521.20
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0164521.20 - phase: 0 /partial
(1611 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
27504.m000624 Disease resistance protein RPM1, putative 321 7e-87
27504.m000625 Disease resistance protein RPM1, putative 88 2e-16
29758.m000654 conserved hypothetical protein 60 4e-08
>27504.m000624 Disease resistance protein RPM1, putative
Length = 1716
Score = 321 bits (162), Expect = 7e-87
Identities = 387/462 (83%)
Strand = Plus / Plus
Query: 556 ttggtgttaaatttggatggtaaaatagagtattcgcctgatgaagtaggagacttggtt 615
|||||||| || |||||||||||||||| |||| || ||||| |||| || ||||||
Sbjct: 661 ttggtgttggatgtggatggtaaaatagaatatttacccaatgaaataggggatttggtt 720
Query: 616 cacctgagatatttatgcttggaaaactcagatcttgatgagcttccgaagagtttaggt 675
||||||||||||||| ||||||||||||||||||| |||||||||| || ||||||
Sbjct: 721 cacctgagatatttaggcttggaaaactcagatctgaatgagcttccacaggctttaggc 780
Query: 676 aaccttcaaaatctccaaactttggatataagaatgtgcggaaacatgcaggaactacca 735
|| ||||| || || ||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 781 aatcttcagaaacttcaaactttggatataagaatgtgcggatggctgcatgaactacca 840
Query: 736 atagaagttctaaatattcaacaattaaggcaccttctcatgtcaaaatccattaatgat 795
|| |||||||| | ||| ||||||| ||||||||||| ||||| | | ||| | ||
Sbjct: 841 attgaagttctgagaattaaacaattgaggcaccttcttatgtccagaagcatcgaatat 900
Query: 796 ggtgaaattagagtcccaaaagagataggaaaattagtgaatctcattactttcactggt 855
|||||||||| ||| || |||| ||| || || || ||||||||| ||||||||||||
Sbjct: 901 ggtgaaattatagtacccaaagggattggtaagttggtgaatctccacactttcactggt 960
Query: 856 gtgtatgctggagggggcattgctaatgaattgagcaacttaacccaactgcaagaactc 915
|||||||||||||| |||||||||| ||||||||||| |||||||||| | | ||| ||
Sbjct: 961 gtgtatgctggaggtggcattgctagtgaattgagcaccttaacccaattacgagagctt 1020
Query: 916 ggtgttaagcgtgttagcgaagatcatgctagtgagcttttcgcagccatcatgaagatg 975
|| |||||||| || |||||||||||||| |||||||| | |||||||||||||| |||
Sbjct: 1021 ggcgttaagcgagtcagcgaagatcatgccagtgagctatatgcagccatcatgaaaatg 1080
Query: 976 gaaaatcttatctccttgtcactagaagctgaggaacactac 1017
| |||||| |||||||||||||||||||| ||| || |||||
Sbjct: 1081 ggaaatctcatctccttgtcactagaagcagagcaaaactac 1122
Score = 113 bits (57), Expect = 3e-24
Identities = 191/235 (81%), Gaps = 3/235 (1%)
Strand = Plus / Plus
Query: 1261 attggtaaagaattttgccaagcaggtgggtttccagagttggaaactattacaattgat 1320
||||||||||| || ||||||||||||||||| | |||||| ||||| ||||||||| |
Sbjct: 1369 attggtaaagatttctgccaagcaggtgggttccgggagttgcaaactcttacaattgct 1428
Query: 1321 tctagcttcctagtggattggagtgagattgtaaacggggcatttccaaggttaaagagt 1380
|| | || |||||||| |||| ||||||| ||| | |||||||||| ||||| ||
Sbjct: 1429 tccaagtttctagtggaatggacagagattgaaaatgaagcatttccaaaattaaaatgt 1488
Query: 1381 ctaaatattcgttgtcct---gagttgaggttccttcctgaaggattacaaaacattgct 1437
|| | | ||||||| | |||||||| || ||||||||||| |||||||||||| ||
Sbjct: 1489 cttagttttcgttgctgtttagagttgagatttcttcctgaaggtttacaaaacatttct 1548
Query: 1438 acacttgaagaactgcatttgactcctatgcatggagaccttgcgaggagattaa 1492
|||||||| ||||| ||||| ||||||||||| ||||||||| |||||||||
Sbjct: 1549 acacttgaggaactagctttgattcctatgcatgaagaccttgcttggagattaa 1603
>27504.m000625 Disease resistance protein RPM1, putative
Length = 1641
Score = 87.7 bits (44), Expect = 2e-16
Identities = 116/140 (82%)
Strand = Plus / Plus
Query: 856 gtgtatgctggagggggcattgctaatgaattgagcaacttaacccaactgcaagaactc 915
|||||||||||||| || ||||||||||||||| | |||| ||||||| || ||||
Sbjct: 958 gtgtatgctggaggtgggattgctaatgaattgggtgccttagtccaactgaaaaaactt 1017
Query: 916 ggtgttaagcgtgttagcgaagatcatgctagtgagcttttcgcagccatcatgaagatg 975
|||||||||||| | ||||||||||||||||| || | ||||||||||||||||||
Sbjct: 1018 ggtgttaagcgtatctctgaagatcatgctagtgatctatctgcagccatcatgaagatg 1077
Query: 976 gaaaatcttatctccttgtc 995
||| ||| ||||||||||
Sbjct: 1078 tcaaaacttgtctccttgtc 1097
Score = 69.9 bits (35), Expect = 5e-11
Identities = 113/139 (81%)
Strand = Plus / Plus
Query: 403 gaagatgatgggaaggaaattgctcctgactttgaagaccttcaaattcgttcactgttt 462
||||||||||||||||| ||| ||||| |||| || ||||||||||| ||| |||||
Sbjct: 499 gaagatgatgggaaggacattcctcctaacttcaaaagccttcaaattcattctttgttt 558
Query: 463 ttgattactgcagagagacgacgttcttcatctgattctactcaaggcctttctcgggcc 522
||||||||||| ||| |||| | |||| || | |||| ||| ||| ||||||||||||
Sbjct: 559 ttgattactgctgagcgacgtgctccttcttccgtttctgctcgaggactttctcgggcc 618
Query: 523 tatatagcaactatttgca 541
|| || | |||| ||||||
Sbjct: 619 tacatggaaactttttgca 637
Score = 54.0 bits (27), Expect = 3e-06
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 74 atttcatttcaatatatcaaagtcttcctgattatctcatgtcctgcttagattattgt 132
||||||| |||| ||| ||| |||||||||| |||||| ||| |||||||||||||||
Sbjct: 173 atttcatgtcaaactatgaaaatcttcctgatcatctcaagtcatgcttagattattgt 231
>29758.m000654 conserved hypothetical protein
Length = 675
Score = 60.0 bits (30), Expect = 4e-08
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 934 gaagatcatgctagtgagcttttcgcagccatcatgaagatggaaaatcttatctccttg 993
||||||||||||||||| || |||||||||||||||||||||| || |||||||||
Sbjct: 397 gaagatcatgctagtgatctagcttcagccatcatgaagatggaaaacctcatctccttg 456
Query: 994 tc 995
||
Sbjct: 457 tc 458