Jatropha Genome Database

JcCB0159721.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0159721.10 + phase: 0 
         (729 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29333.m001086 Carotenoid isomerase, chloroplast precursor, putative   589   e-168

>29333.m001086 Carotenoid isomerase, chloroplast precursor, putative
          Length = 1854

 Score =  589 bits (297), Expect = e-168
 Identities = 438/486 (90%), Gaps = 8/486 (1%)
 Strand = Plus / Plus

                                                                       
Query: 241 gatgccattgtgattgggtctgggattggtgggttggttgccgctacacagctggctgtg 300
           ||||| ||||| ||||| |||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 301 gatgctattgttattggttctgggattggtggtttggttgctgctacacagctggctgtg 360

                                                                       
Query: 301 aagggagctagggttttggttttggagaagtatacgattcctggtggtagctctgggtat 360
           |||||||||||||||||||||||||||||||||  |||||||||||| |||||||| |||
Sbjct: 361 aagggagctagggttttggttttggagaagtatgtgattcctggtgggagctctggttat 420

                                                                       
Query: 361 taccagagggatggttatacttttgatgttgggtcttctgtgatgtttggtttcagtgac 420
           ||  |||||||||||||||||||||||||||||||||| || |||||||| |||||||| 
Sbjct: 421 tatgagagggatggttatacttttgatgttgggtcttcagttatgtttggcttcagtgat 480

                                                                       
Query: 421 aagggcaatctaaatttgataactcaagcattggctgcagttggttgtaaaatggaggtc 480
           |||||||| |||||||||||||| ||||||||||| ||||||||| |||| |||||||| 
Sbjct: 481 aagggcaacctaaatttgataacccaagcattggcagcagttggtcgtaagatggaggtg 540

                                                                       
Query: 481 attcctgatccaactactgttcattttcatctacccaataatctttctgttcgagttcac 540
           ||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 541 attcctgatccaagtactgtccatttccatctacccaataatctttctgttcgagttcac 600

                                                                       
Query: 541 agggagtacagtgacttcatctcagaacttactactaaatttcctcatgagaaggaaggg 600
           || ||||||||||||||  |||| ||||||| ||||| |||||| |||||  || |||||
Sbjct: 601 agagagtacagtgactttgtctcggaacttattactagatttccccatgaagagcaaggg 660

                                                                       
Query: 601 atccttaaattctatggtgaatgttggaag--------tgccttaaactcattggaattg 652
           || |||||||||||||||||||||||||||        ||||||||| ||||||||||||
Sbjct: 661 attcttaaattctatggtgaatgttggaagatattcaatgccttaaattcattggaattg 720

                                                                       
Query: 653 aagtcattggaggagccaatttacctgtttggacagttctttcagaagccactcgaatgc 712
           |||||| ||||||||||||||||||||||||| ||||||||||||||||| || ||||||
Sbjct: 721 aagtcactggaggagccaatttacctgtttgggcagttctttcagaagcctcttgaatgc 780

                 
Query: 713 ttgaca 718
           ||||||
Sbjct: 781 ttgaca 786