Jatropha Genome Database

JcCB0156631.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0156631.10 + phase: 0 
         (558 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28718.m000038 DNA binding protein, putative                           182   1e-45
30170.m013843 Dehydration-responsive element-binding protein 1B,...    70   2e-11

>28718.m000038 DNA binding protein, putative
          Length = 390

 Score =  182 bits (92), Expect = 1e-45
 Identities = 149/168 (88%)
 Strand = Plus / Plus

                                                                       
Query: 86  agtgggggaaatgggtggctgagataagagaacctaataagcggtcaaggatttggctcg 145
           ||||||| || ||||||||||||||||||||||| || |||||||||||||||||| | |
Sbjct: 98  agtggggaaagtgggtggctgagataagagaaccgaacaagcggtcaaggatttggttag 157

                                                                       
Query: 146 gctcctattcgactcctgtggcggcggctagggcctatgacactgcggttttctatttga 205
           | || |||||||||||||| ||||| ||| | ||||||||||| ||||||||||||||||
Sbjct: 158 gttcttattcgactcctgttgcggccgctcgagcctatgacacggcggttttctatttga 217

                                                           
Query: 206 gaggaccgtcggcgaggcttaattttcctgaatatttggcgggagaaa 253
           |||| ||||| || |||||||||||||| || |||||||| |||||||
Sbjct: 218 gaggcccgtctgcaaggcttaattttcccgagtatttggcaggagaaa 265



 Score = 81.8 bits (41), Expect = 4e-15
 Identities = 56/61 (91%)
 Strand = Plus / Plus

                                                                       
Query: 498 ggtcgacttgaataagatgcccgacccggaagactcggatgctgactgggaaaggaatta 557
           |||||||||||||||| | |||||||||||||| ||||||| ||| ||||||||||||||
Sbjct: 330 ggtcgacttgaataaggtacccgacccggaagattcggatgttgaatgggaaaggaatta 389

            
Query: 558 g 558
           |
Sbjct: 390 g 390


>30170.m013843 Dehydration-responsive element-binding protein 1B,
           putative
          Length = 489

 Score = 69.9 bits (35), Expect = 2e-11
 Identities = 122/151 (80%)
 Strand = Plus / Plus

                                                                       
Query: 86  agtgggggaaatgggtggctgagataagagaacctaataagcggtcaaggatttggctcg 145
           |||||||||| ||||| |||||||| |||||||| || ||||| || || |||||||| |
Sbjct: 137 agtgggggaagtgggttgctgagattagagaacccaacaagcgttcgagaatttggcttg 196

                                                                       
Query: 146 gctcctattcgactcctgtggcggcggctagggcctatgacactgcggttttctatttga 205
           | || ||||| || ||| | || || ||| | || |||||||| || ||||||||  | |
Sbjct: 197 gttcttattcaacccctatagctgctgctcgtgcttatgacaccgcagttttctacctta 256

                                          
Query: 206 gaggaccgtcggcgaggcttaattttcctga 236
           |||| || || || |||||||||||||||||
Sbjct: 257 gaggtccttctgctaggcttaattttcctga 287