Jatropha Genome Database

JcCB0156321.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0156321.10 + phase: 0 /pseudo/partial
         (472 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28229.m000056 S-locus-specific glycoprotein S6 precursor, putative     96   2e-19
30014.m000437 conserved hypothetical protein                           88   6e-17
30014.m000456 ATP binding protein, putative                            88   6e-17

>28229.m000056 S-locus-specific glycoprotein S6 precursor, putative
          Length = 2469

 Score = 95.6 bits (48), Expect = 2e-19
 Identities = 105/124 (84%)
 Strand = Plus / Plus

                                                                        
Query: 74   tcaaaaatgaagttaaattgattgcaagacttcagcgctgaaatcttgtaaagcttcttg 133
            |||||||||||||||  ||||||||||| ||||||| | | |||||||| ||||||||||
Sbjct: 1637 tcaaaaatgaagttattttgattgcaaggcttcagcacaggaatcttgtgaagcttcttg 1696

                                                                        
Query: 134  gttgctgtattcaaggagttgagagaatactaatttatgaatacatgccgaacagaagcc 193
            ||||||| ||||| |||| ||| | |||  | || |||||||||||||| |||| |||| 
Sbjct: 1697 gttgctgcattcatggagatgaaaaaatgttgatctatgaatacatgcccaacaaaagct 1756

                
Query: 194  tgga 197
            ||||
Sbjct: 1757 tgga 1760


>30014.m000437 conserved hypothetical protein
          Length = 1397

 Score = 87.7 bits (44), Expect = 6e-17
 Identities = 128/156 (82%)
 Strand = Plus / Plus

                                                                        
Query: 56   gacaaggattaacagagctcaaaaatgaagttaaattgattgcaagacttcagcgctgaa 115
            |||||||| | |||||| ||||||   |||| ||||| || |||| |||||| |   |||
Sbjct: 1091 gacaaggagtgacagagttcaaaatgaaagtaaaattaatcgcaaaacttcaacatcgaa 1150

                                                                        
Query: 116  atcttgtaaagcttcttggttgctgtattcaaggagttgagagaatactaatttatgaat 175
            || |||||||||||||||| ||||| |||||||||| ||| ||||| |||||||| ||||
Sbjct: 1151 attttgtaaagcttcttggctgctgcattcaaggagatgaaagaatgctaatttacgaat 1210

                                                
Query: 176  acatgccgaacagaagcctggattactacatttttg 211
            ||||||| || | ||| ||||| | || ||||||||
Sbjct: 1211 acatgccaaataaaagtctggacttcttcatttttg 1246


>30014.m000456 ATP binding protein, putative
          Length = 4794

 Score = 87.7 bits (44), Expect = 6e-17
 Identities = 104/124 (83%)
 Strand = Plus / Plus

                                                                        
Query: 74   tcaaaaatgaagttaaattgattgcaagacttcagcgctgaaatcttgtaaagcttcttg 133
            ||||||||||||| | ||| || || |||||||||| | | |||||||||||||||||||
Sbjct: 3962 tcaaaaatgaagtaatattaatagccagacttcagcaccgtaatcttgtaaagcttcttg 4021

                                                                        
Query: 134  gttgctgtattcaaggagttgagagaatactaatttatgaatacatgccgaacagaagcc 193
            ||||||| | ||| | || ||||| |||  |||| |||||||||||||| |||| |||| 
Sbjct: 4022 gttgctgcactcatgaagatgagaaaatgttaatctatgaatacatgcctaacaaaagct 4081

                
Query: 194  tgga 197
            ||||
Sbjct: 4082 tgga 4085