Jatropha Genome Database

JcCB0155891.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0155891.20 - phase: 2 /TE/partial
         (1116 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30010.m000663 DNA repair helicase rad5,16, putative                   172   3e-42

>30010.m000663 DNA repair helicase rad5,16, putative
          Length = 2625

 Score =  172 bits (87), Expect = 3e-42
 Identities = 142/159 (89%), Gaps = 1/159 (0%)
 Strand = Plus / Plus

                                                                        
Query: 65   agtccggtgtaaattgtgtccaattggtgggaagcatgtctttgcctgcaagggatgctg 124
            |||| ||| |||||||||| ||||| ||||||||||||||||| |||||||| |||  ||
Sbjct: 2228 agtctggtataaattgtgttcaattagtgggaagcatgtctttacctgcaagagataatg 2287

                                                                        
Query: 125  ctatcaagaaatttactgaggatccagattgcaagatcttccttaatgagtttaaaagct 184
            ||||||||| ||||| |||||||||| ||||||| ||||| |||||||||||| ||||||
Sbjct: 2288 ctatcaagagatttagtgaggatccaaattgcaaaatctt-cttaatgagtttgaaagct 2346

                                                   
Query: 185  gggggcattgctctcaatctgacagtagcatcacatgtt 223
            || ||  ||||||||||||||||||||||||||||||||
Sbjct: 2347 ggaggtgttgctctcaatctgacagtagcatcacatgtt 2385



 Score = 89.7 bits (45), Expect = 3e-17
 Identities = 78/89 (87%)
 Strand = Plus / Plus

                                                                        
Query: 703  gttttcttgatggatccttggtggaacccagctgtagaacgtcaagcccaagatagaatt 762
            |||||||||||||||||||||||||| |||||||| || || ||||| ||||||||||| 
Sbjct: 2383 gttttcttgatggatccttggtggaatccagctgtggagcggcaagcacaagatagaata 2442

                                         
Query: 763  catcggataggccaatacaaaccaatcag 791
            ||||| || || || || |||||||||||
Sbjct: 2443 catcgaattgggcagtataaaccaatcag 2471



 Score = 75.8 bits (38), Expect = 5e-13
 Identities = 53/58 (91%)
 Strand = Plus / Plus

                                                                      
Query: 878  agaattgtgagatttatcattgaggacacagttgaggagaggattttgcagctgcaag 935
            ||||||||||||||  | |||||| ||||| |||||||||||||||||||||||||||
Sbjct: 2470 agaattgtgagattcgttattgagaacacaattgaggagaggattttgcagctgcaag 2527