Jatropha Genome Database
- JcCB0155711.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0155711.10 + phase: 0 /pseudo/partial
(851 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
30138.m003942 LIGULELESS1 protein, putative 456 e-127
30174.m009082 LIGULELESS1 protein, putative 168 3e-41
30170.m014245 Squamosa promoter-binding protein, putative 56 4e-07
>30138.m003942 LIGULELESS1 protein, putative
Length = 1674
Score = 456 bits (230), Expect = e-127
Identities = 663/804 (82%), Gaps = 15/804 (1%)
Strand = Plus / Plus
Query: 8 cttggagctatgttcatggagggaaggatattgtatcaagggaaacaatttcatcttctg 67
|||||| ||||||| ||||||||||| ||||||| | |||||| |||||| ||||
Sbjct: 8 cttggaactatgtttctggagggaaggggtttgtatccaatgaaacagcttcatcgtctg 67
Query: 68 acactattgccaaaagcagaaatgccttgctgggctgggatttgaaaacggctagt---t 124
| ||||||||||||||| ||||| ||| |||| |||||||||||||| ||| || |
Sbjct: 68 attctattgccaaaagcaaaaatgtgttgatgggttgggatttgaaaactgcttgtggtt 127
Query: 125 ttggtaataaca---tggtcatctcaagtcaacaagctattgagaatcaaaattttgggc 181
| || || || | ||||| || | |||||||||||||||||||||| |||||||
Sbjct: 128 tcggcaacaataatgtggtcgtcgcgggtcaacaagctattgagaatcactgttttgggg 187
Query: 182 atttgagttatcaagaaatgatgggaaaacaattacctgataattcaattagggtgtctt 241
| || | |||||||||| ||||||| |||||||| |||||||||||||| ||| |||
Sbjct: 188 aattaaattatcaagaattgatggggaaacaattgcctgataattcaataaggaatgctt 247
Query: 242 tgagcagtgaagttgatgttgggaaaatcattaatccttttattgttaataacactaata 301
| || ||||||| ||||| ||| |||| ||| || | ||| || ||||| || |||
Sbjct: 248 taagtagtgaagctgatggtggaaaaagcatcaaccatttcatggttaa---catgaatg 304
Query: 302 gtttttctttagaagttgaatccacttcttcaaggctttctagctctgttatggattcta 361
||| || |||||| ||| ||||| || |||||||||||| ||||| |||| || |
Sbjct: 305 ttttctccttagaacatgagtccacatc---aaggctttctagaactgttgtggaatcca 361
Query: 362 atagtagagattcttcatttattgatttgaagctgggaaggtttggtgatccaacaacag 421
| ||||| ||||||||||| ||||||||||| || |||||||| |||||||||||| |
Sbjct: 362 acagtagggattcttcattcattgatttgaaacttggaaggttcggtgatccaaca---g 418
Query: 422 atgctcaaaattcaagaacttctaagggagcatccattctgtcttcatctgattcatcaa 481
| | ||| ||||| |||| ||| || |||||||| || ||||||||||||| ||||| |
Sbjct: 419 aaggtcataattccagaatttccaaaggagcatctgttatgtcttcatctgagtcatcca 478
Query: 482 atcctccaaagagaatgagaccaggagtgaattcccatactgcctactgccaagtttatg 541
||||||||||||| ||||| ||||||||||| || |||| | |||||||||||||
Sbjct: 479 ctcctccaaagagactgagagtgggagtgaattcacaccctgcacattgccaagtttatg 538
Query: 542 gttgtaataaggatctcagttcttcaaaagaatatcacaagagacataaagtctgtgaag 601
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 539 gttgtaataaggatctcagctcctcaaaagaatatcacaagagacataaagtctgtgaag 598
Query: 602 ttcactccaaaactgctaaagttattgttaatggaattgaacagaggttttgtcagcaat 661
|||||||||| || | |||||||| || || |||||||| |||||||||||||||||||
Sbjct: 599 ttcactccaagacgtccaaagttatagtgaacggaattgagcagaggttttgtcagcaat 658
Query: 662 gcagcaggtttcatttgctggctgaatttgatgatggtaagcgcagctgccgtaaacggc 721
||||| |||||||||| |||||||||||||||||||| ||||| ||||| |||||||| |
Sbjct: 659 gcagccggtttcatttactggctgaatttgatgatggcaagcgaagctgtcgtaaacgcc 718
Query: 722 ttgcaggccacaatgaacgaaggagaaagcctcaagttggtcttcacgccggaaggactg 781
||||||||||||||||||| |||| || ||||||||||||| |||| | ||||||||||
Sbjct: 719 ttgcaggccacaatgaacgtcggaggaaacctcaagttggtcctcactctggaaggactg 778
Query: 782 gaagactaattcagtcatacaatg 805
||| ||| | |||||||||||||
Sbjct: 779 gaaagctactccagtcatacaatg 802
Score = 60.0 bits (30), Expect = 2e-08
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 814 atatgggacaaataattggtgcaggcaaataaaagttg 851
|||||| ||| |||||||||||||||||||||||||||
Sbjct: 891 atatggaacagataattggtgcaggcaaataaaagttg 928
>30174.m009082 LIGULELESS1 protein, putative
Length = 1539
Score = 168 bits (85), Expect = 3e-41
Identities = 190/225 (84%)
Strand = Plus / Plus
Query: 538 tatggttgtaataaggatctcagttcttcaaaagaatatcacaagagacataaagtctgt 597
||||||||||| ||||||||||| || | || || || || ||||| |||||||| |||
Sbjct: 523 tatggttgtaacaaggatctcagctccttgaaggattaccataagaggcataaagtttgt 582
Query: 598 gaagttcactccaaaactgctaaagttattgttaatggaattgaacagaggttttgtcag 657
||||||||||| || ||| |||||||||| |||||||| |||| || || |||||||||
Sbjct: 583 gaagttcactcaaagactcctaaagttatcgttaatggtgttgagcaaagattttgtcag 642
Query: 658 caatgcagcaggtttcatttgctggctgaatttgatgatggtaagcgcagctgccgtaaa 717
|| || ||||||||||||||| ||| ||| || |||||||||||||| || || ||||||
Sbjct: 643 cagtgtagcaggtttcatttgttggttgagttcgatgatggtaagcgtagttgtcgtaaa 702
Query: 718 cggcttgcaggccacaatgaacgaaggagaaagcctcaagttggt 762
|| || ||||||||||||||||| || || ||||||||| |||||
Sbjct: 703 cgtctagcaggccacaatgaacgtagaaggaagcctcaatttggt 747
>30170.m014245 Squamosa promoter-binding protein, putative
Length = 3222
Score = 56.0 bits (28), Expect = 4e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 643 cagaggttttgtcagcaatgcagcaggtttca 674
||||||||||||||||| ||||||||||||||
Sbjct: 559 cagaggttttgtcagcagtgcagcaggtttca 590