Jatropha Genome Database

JcCB0154691.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0154691.10 - phase: 0 /partial
         (471 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28124.m000244 Chorismate mutase, chloroplast precursor, putative      325   1e-88

>28124.m000244 Chorismate mutase, chloroplast precursor, putative
          Length = 966

 Score =  325 bits (164), Expect = 1e-88
 Identities = 397/474 (83%), Gaps = 3/474 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgctgcatcctattgctgactcgattaatataaataagaaagtatgggacctatacttc 60
           ||||| |||||  ||||||| || |||||||||||||| |||||||||||| | ||||| 
Sbjct: 490 gtgctacatccgcttgctgattcaattaatataaataacaaagtatgggacatgtacttt 549

                                                                       
Query: 61  agagatgtgctcccaagattggtcaaggatgggaatgatggtaattgtggatcaactgct 120
            | ||| | ||||||||||||||||||||||| | |||||| |||| ||||||||| |||
Sbjct: 550 cgggatcttctcccaagattggtcaaggatggaagtgatggaaattctggatcaacagct 609

                                                                       
Query: 121 gtttgtgacacaatctgcctgcaggttctctcaaaaagaattcattatggaaaatttgta 180
           || |||||  ||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 610 gtgtgtgatgcaatctgcctgcaggttctgtcaaaaagaatacattatggaaaatttgta 669

                                                                       
Query: 181 gcagaagcaaaattccgaaactctccagatgcatataaagctgctattagagcacaggac 240
           |||||||| ||||| || || || |||||||| ||  |||| || |||||||||||||||
Sbjct: 670 gcagaagccaaatttcgcaattccccagatgcctacgaagcggccattagagcacaggac 729

                                                                       
Query: 241 agagatagattgatggatttgctcacctacagcaaagttgaagaggcaataaaaaagaga 300
           ||  |||| |||||||| ||||| || ||||  || |||||||||||||| |||||||||
Sbjct: 730 aggtataggttgatggagttgctgacatacacaaaggttgaagaggcaatcaaaaagaga 789

                                                                       
Query: 301 gtggaaatgaaagccataacttttggccaagaggtga---caatatgtttcggagatgag 357
           |||||||| ||| | | ||| ||||| ||||||||||   |||| |||   | |||||| 
Sbjct: 790 gtggaaataaaaacgaaaacctttgggcaagaggtgactgcaatttgtgaggaagatgaa 849

                                                                       
Query: 358 gataccgatccagtatacaaaatagatcctggcttggttgcggagttgtatggggaatgg 417
             ||| || |||| ||||||||||||| |   ||||||||| || || ||||| || |||
Sbjct: 850 attacggagccagcatacaaaatagatacaaccttggttgctgatttatatggagactgg 909

                                                                 
Query: 418 atcatgccattgacaaaggaagttcaagttgaatatttattaagaagattggat 471
           ||||||||| |||||||||||||||||||||| |||||||| || || ||||||
Sbjct: 910 atcatgccactgacaaaggaagttcaagttgagtatttattgaggaggttggat 963