Jatropha Genome Database

JcCB0151651.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0151651.10 + phase: 1 /pseudo/partial
         (507 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30217.m000264 RING finger protein, putative                           289   8e-78

>30217.m000264 RING finger protein, putative
          Length = 675

 Score =  289 bits (146), Expect = 8e-78
 Identities = 245/276 (88%), Gaps = 4/276 (1%)
 Strand = Plus / Plus

                                                                       
Query: 226 ttattaattgtgaacattatgtaaatttggaaagcagtggcagctctatgagagataatg 285
           |||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||| 
Sbjct: 395 ttatcaattgtgatcattatgtaaatttggaaagcagtagcagctctatgagagataata 454

                                                                       
Query: 286 cgcaacagctgcagccacctccacctccaaaggagccaaccttcaactgtccaatatgca 345
             ||||  |  |   |||||||||| |||||||||||||| |||||||||||||| ||||
Sbjct: 455 tccaaccacgac---cacctccaccaccaaaggagccaactttcaactgtccaatttgca 511

                                                                       
Query: 346 tgggtccatttgttgaagaaacatcaacaaaatgtgggcacatttttctgtaaggcttgc 405
           ||||||||||| | || ||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 512 tgggtccatttatcgaggaaacatcaacaaaatgtgggcatatttt-ctgtaaggcttgc 570

                                                                       
Query: 406 attagggctgcaattggagtacagtcgaaatgtcctacttgtaggaaaaaagtcactgtt 465
           || | | ||||||||||||| ||||||||||||||||| |||||||||| ||||||  ||
Sbjct: 571 atcaagactgcaattggagttcagtcgaaatgtcctacatgtaggaaaagagtcaccatt 630

                                               
Query: 466 aaagaacttattagagtgttccttccagcaaccagt 501
           |||||||| ||||| |||||||||||||||||||||
Sbjct: 631 aaagaactcattagggtgttccttccagcaaccagt 666