Jatropha Genome Database

JcCB0149421.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0149421.10 + phase: 0 
         (1143 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30169.m006314 Casbene synthase, chloroplast precursor, putative        76   5e-13
29910.m000944 Terpinolene synthase, chloroplast precursor, putative    76   5e-13
29827.m002614 Casbene synthase, chloroplast precursor, putative        52   8e-06

>30169.m006314 Casbene synthase, chloroplast precursor, putative
          Length = 1668

 Score = 75.8 bits (38), Expect = 5e-13
 Identities = 62/70 (88%)
 Strand = Plus / Plus

                                                                       
Query: 47  tgaagggcattctcagcttatatgaagcaagttttgtaagtgtgcacggagaagatattc 106
           |||| ||| |||| |||||||| ||||| |||||| |||||||||| |||||| ||||||
Sbjct: 431 tgaaaggccttcttagcttatacgaagcgagttttctaagtgtgcatggagaaaatattc 490

                     
Query: 107 tagatgaagc 116
           ||||||||||
Sbjct: 491 tagatgaagc 500



 Score = 61.9 bits (31), Expect = 8e-09
 Identities = 55/63 (87%)
 Strand = Plus / Plus

                                                                        
Query: 846  ggatgagcaaaagagggaagattgtgcttcaagtgtagagtgttacaaaaaggaatatgg 905
            ||||||||||||||||| | |||||||||||||| |||| || ||||  || ||||||||
Sbjct: 1374 ggatgagcaaaagaggggacattgtgcttcaagtatagaatgctacatgaaagaatatgg 1433

               
Query: 906  tgt 908
            |||
Sbjct: 1434 tgt 1436


>29910.m000944 Terpinolene synthase, chloroplast precursor, putative
          Length = 1431

 Score = 75.8 bits (38), Expect = 5e-13
 Identities = 62/70 (88%)
 Strand = Plus / Plus

                                                                       
Query: 61  agcttatatgaagcaagttttgtaagtgtgcacggagaagatattctagatgaagctctt 120
           |||||||| ||||| |  ||| |||||||||| |||||||||||| |||||||||| |||
Sbjct: 355 agcttatacgaagccacctttctaagtgtgcatggagaagatattttagatgaagcactt 414

                     
Query: 121 gcttttacaa 130
           ||||||||||
Sbjct: 415 gcttttacaa 424


>29827.m002614 Casbene synthase, chloroplast precursor, putative
          Length = 1656

 Score = 52.0 bits (26), Expect = 8e-06
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                 
Query: 80  ttgtaagtgtgcacggagaagatattctagatgaagctcttgcttttacaaagc 133
           |||| ||||| || |||||||| ||| |||||||||| |||| |||||||||||
Sbjct: 482 ttgtgagtgttcatggagaagagattttagatgaagcccttgtttttacaaagc 535