Jatropha Genome Database
- JcCB0144231.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0144231.10 + phase: 1 /pseudo/partial
(2159 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29854.m001091 pentatricopeptide repeat-containing protein, putative 995 0.0
>29854.m001091 pentatricopeptide repeat-containing protein, putative
Length = 1968
Score = 995 bits (502), Expect = 0.0
Identities = 1130/1338 (84%), Gaps = 6/1338 (0%)
Strand = Plus / Plus
Query: 84 tttgtttgtaatgcagtggttactatgtatggtaggtgtggcgcattggatcatgcgcgc 143
|||||||| ||||| || || |||||||||| ||||||||||| | | | |||| |||
Sbjct: 523 tttgtttgcaatgcggtagtggctatgtatggcaggtgtggcgcgtcgagttatgcacgc 582
Query: 144 caaatgtttgatgaaatgtataaaagtgagatatttgatttggtttcctggaattcaatg 203
||||||||||||||| || || | ||| |||||||||||||||| |||||||| |||
Sbjct: 583 caaatgtttgatgaattgcttatgggagaggtatttgatttggtttcttggaattctatg 642
Query: 204 gttgctgcttatgtgcaaagtggggatacgaagagtgcacttggtttgtttcaaaaaatg 263
| |||| |||| |||||||||| ||| || |||| | ||| ||||| | | ||||
Sbjct: 643 atcgctgtttatttgcaaagtggcgatttaaaaagtggaattgaattgttccgtagaatg 702
Query: 264 tgggaaatggttgatgttgatatccagctagatgctgttagtctggtcaatgtgctgcct 323
||| || ||| ||| |||||||| || ||||||||||||||||| |||||| | |||
Sbjct: 703 tggaaagtgggtgaatttgatatcgtgccggatgctgttagtctggtgaatgtgttacct 762
Query: 324 gcttttgcttctatgggttcttggtggtttggcaagcaggtgcatggttttgccgtaagg 383
|||| ||||||||||||| ||||| || ||| ||||| || ||||||||||| | |||
Sbjct: 763 gcttgtgcttctatgggtgattggttgtgtggtaagcaagtacatggttttgcgatcagg 822
Query: 384 agtgggttatttgaagatgtgtttgtgggcaattcattggtggatatgtatgcaaagtgt 443
||| || ||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 823 tatggcttgtttgaagatgtgtttgtagctaattcattggtggatatgtatgcaaagtgt 882
Query: 444 ggaatgatgcatgaagcttccaaggtttttgagcggatgcagaagaaggatgtagtttct 503
|| ||||| |||| |||||||||||| ||||||||| | |||||||| ||||||
Sbjct: 883 ggtttgatgtgcatagctaacaaggtttttgaccggatgcagcataaggatgtggtttct 942
Query: 504 tggaacgcaatggttactggatattctcatattggtatgtttgagaatgctctaactttg 563
||||| |||||||||||||| |||||||| || |||| ||| ||| ||||||| ||||
Sbjct: 943 tggaatgcaatggttactgggtattctcaaatcggtaagttcgaggatgctcttggtttg 1002
Query: 564 tttgagcagatgagggaggagaacattgagttggatgttgtttcttggagtacggtcatt 623
|||||| ||||||| ||||| || ||| ||||||||||||| ||||||||| | || |||
Sbjct: 1003 tttgagaagatgagagaggaaaagattcagttggatgttgtgtcttggagtgctgttatt 1062
Query: 624 gcaggatatgcacagaaaggacttgggtatgaagcattgaatgtgtttaggcaaatgcag 683
|||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1063 gcaggatatgcacagaggggacttggctatgaagcattgaatgtgtttaggcaaatgcag 1122
Query: 684 tcttgtcactcgaagccaaatgaggttacccttgtgtcgcttctttctggttgcgcatcg 743
|||| | || |||||||||||||||||||| || |||||||||||||| || ||
Sbjct: 1123 gtttgtgggttgagaccaaatgaggttacccttgtttcacttctttctggttgtgcttca 1182
Query: 744 gttggagcattgattcatgggaaggagacacattgttataccataaaatgcattttgaac 803
|||||||| ||| |||||||||||||||||||||| ||| |||||||||| ||||||||
Sbjct: 1183 gttggagcgttgcttcatgggaaggagacacattgctattccataaaatgtgttttgaac 1242
Query: 804 tatgacaggtgtgatca---ggatgaacttttggtgattaatgccataattgacatgtac 860
| ||||||| |||||| |||||| ||||||||| |||||||||||||||||||||||
Sbjct: 1243 tttgacaggagtgatccacgggatgagcttttggtggttaatgccataattgacatgtac 1302
Query: 861 acaaagtgcaaaagtataagtgtggctcgtgccatttttgattctgttgccccaaaggat 920
|||||||||||| ||| | ||| | |||||| |||||| ||||| | | || ||||||
Sbjct: 1303 acaaagtgcaaagatatcaatgtaggtcgtgcaatttttaattctataccgcccaaggat 1362
Query: 921 aggaatgtagtgacttggactgctatgattggtggatatgcccaacatggagaagccaat 980
|| || || |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1363 agaaacgtggtgacttggactgctatgattggtggctatgcccaacatggagaagccaat 1422
Query: 981 gattccttagaactcttctcccaaatgttaaaac---aagatagatcagtgaagccaaat 1037
||| | ||||||||||||||||| ||| | |||| | |||||||||| |||||||||
Sbjct: 1423 gatgcattagaactcttctcccagatgctcaaacagtataatagatcagtaaagccaaat 1482
Query: 1038 gcttttaccatatcttgttccttgatggcatgtgctcgtttggctgcattaagatctggt 1097
|| ||||||||||||||| ||||||||||||||||||| | |||||||| || | |||
Sbjct: 1483 gcatttaccatatcttgtgccttgatggcatgtgctcgcctagctgcattgaggtttggc 1542
Query: 1098 agagaaatacatgcctatgtattgcgaaatcaatatgattctgatgtactttatgttgcc 1157
||| |||| ||||| | ||||||||| |||| ||||||| |||||||||||| || |||
Sbjct: 1543 agacaaattcatgcttttgtattgcgcgatcagtatgattgtgatgtactttacgtggcc 1602
Query: 1158 aattgcctaatagatacgtattctaaatctggagatattgatgttgctagagttgtgttt 1217
|||||||| ||||||| |||||||||||| |||||||| |||| ||||||| ||||||||
Sbjct: 1603 aattgcctcatagatatgtattctaaatcaggagatatggatgctgctagacttgtgttt 1662
Query: 1218 gataacatgaagcataaaaatgctgtttcttggacatccctaataacaggttatggcatg 1277
|||||||||||||||| ||| ||||||||||||||||||| || ||||||||||| |||
Sbjct: 1663 gataacatgaagcatagaaacactgtttcttggacatccctgatgacaggttatggtatg 1722
Query: 1278 catggtcaaggtgaagaagcagtcaaggttttcgaggagatgaggaaagaaggccttctt 1337
|||||||| |||||||| ||| | |||||||| || |||||||||| ||| || ||| ||
Sbjct: 1723 catggtcatggtgaagaggcaattaaggtttttgatgagatgaggagagagggtcttgtt 1782
Query: 1338 cctgatggaataacattccttgtcatgctctatgcttgcagccattcaggaatggttgat 1397
| ||||| |||||||||||||| |||||||||||||||||||||| || ||||||||
Sbjct: 1783 tcagatggtataacattccttgttgtgctctatgcttgcagccattctggtatggttgac 1842
Query: 1398 gaagggattaaatacttc 1415
||||||||||||||||||
Sbjct: 1843 gaagggattaaatacttc 1860