Jatropha Genome Database

JcCB0143751.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0143751.20 + phase: 0 
         (408 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m014026 conserved hypothetical protein                          270   6e-72
29912.m005506 conserved hypothetical protein                           58   4e-08

>30170.m014026 conserved hypothetical protein
          Length = 804

 Score =  270 bits (136), Expect = 6e-72
 Identities = 261/302 (86%), Gaps = 3/302 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggcaacgagagatatggagatggagggagatagagaactgcttataccagtcgcagaa 60
           ||||| || ||||| ||| ||||||||||||||  ||| ||||| |||||||| || |||
Sbjct: 1   atggcgacaagagaaatgcagatggagggagatctagagctgctgataccagtggctgaa 60

                                                                       
Query: 61  attcctgaaaacgcaaagtccaaaacgtcgtcgccttcgtctcccgttgccggcgcccct 120
           |||||||| || |||||||||||||||||||||||||| |||||  |   ||  ||  ||
Sbjct: 61  attcctgataatgcaaagtccaaaacgtcgtcgccttcttctcctat---cgttgcttct 117

                                                                       
Query: 121 ccccaccgtctttctggtgtcgaggcattatccaaagtaatacgcagctgggcttcaaaa 180
            | || ||||| |||||  |||||||| |||||| ||| ||||| ||||||||||| |||
Sbjct: 118 tctcatcgtctatctggcctcgaggcactatccacagttatacgtagctgggcttctaaa 177

                                                                       
Query: 181 aagtttatgacaggatgtgtcattcttcttccaatagccgtcacattctacgtcacttgg 240
           || || |||||||||||||||||||||||||||||||| || ||||||||| |||| |||
Sbjct: 178 aaattcatgacaggatgtgtcattcttcttccaatagctgtaacattctacatcacctgg 237

                                                                       
Query: 241 ggttttgttcattttgtggatggtttcttctctccagtctataatcatcttgggatcaat 300
           ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 238 ggttttgttcattttgtggatggtttcttctctccggtctataatcatctggggatcaat 297

             
Query: 301 at 302
           ||
Sbjct: 298 at 299


>29912.m005506 conserved hypothetical protein
          Length = 729

 Score = 58.0 bits (29), Expect = 4e-08
 Identities = 95/117 (81%)
 Strand = Plus / Plus

                                                                       
Query: 166 agctgggcttcaaaaaagtttatgacaggatgtgtcattcttcttccaatagccgtcaca 225
           |||||||||||||| ||||| ||||| |||||||| || ||  | ||||| || ||||| 
Sbjct: 175 agctgggcttcaaagaagttcatgactggatgtgtaatcctattcccaattgctgtcacc 234

                                                                    
Query: 226 ttctacgtcacttggggttttgttcattttgtggatggtttcttctctccagtctat 282
           || ||| | || ||| | ||| |||| ||||| |||||||| ||||||||| |||||
Sbjct: 235 ttttacataacgtggtggtttattcactttgttgatggttttttctctccaatctat 291