Jatropha Genome Database

JcCB0143121.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0143121.10 - phase: 0 /pseudo
         (957 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30204.m001816 Phytochrome-interacting factor, putative                101   8e-21

>30204.m001816 Phytochrome-interacting factor, putative
          Length = 1719

 Score =  101 bits (51), Expect = 8e-21
 Identities = 107/125 (85%), Gaps = 3/125 (2%)
 Strand = Plus / Plus

                                                                       
Query: 7   cactatgttcccgatttcgaaatggatgaagactgcgctatccctacgtcttcaaccttc 66
           |||||||||||||||||||||||||| || || |||||||||||||| || |||||||| 
Sbjct: 7   cactatgttcccgatttcgaaatggacgacgattgcgctatccctacttcatcaacctta 66

                                                                       
Query: 67  acacgccctaaaaagtcaatcacgt---cggaggatgagatcatggaactgctatggcag 123
              ||||||||||| ||||||||||   ||||||||||| ||||||| || || ||||| 
Sbjct: 67  gttcgccctaaaaaatcaatcacgtctacggaggatgagttcatggagcttctgtggcat 126

                
Query: 124 aacgg 128
           |||||
Sbjct: 127 aacgg 131



 Score = 89.7 bits (45), Expect = 3e-17
 Identities = 78/89 (87%)
 Strand = Plus / Plus

                                                                       
Query: 277 atgcaagaagacgagatggcctcttggcttcattatccacttaatgatacaaattttgat 336
           ||||||||||| |||||||| |||||||||||||||||  | || || || ||||| |||
Sbjct: 325 atgcaagaagatgagatggcttcttggcttcattatcctatcaacgacactaatttcgat 384

                                        
Query: 337 caagatttctgtgctgatctcctttatcc 365
           ||||||||||| || ||||||||||||||
Sbjct: 385 caagatttctgcgccgatctcctttatcc 413