Jatropha Genome Database

JcCB0136181.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0136181.20 - phase: 0 /pseudo/partial
         (639 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29929.m004750 heat shock protein, putative                            190   7e-48
30186.m001320 ubiquitin-protein ligase, putative                       52   4e-06

>29929.m004750 heat shock protein, putative
          Length = 762

 Score =  190 bits (96), Expect = 7e-48
 Identities = 253/302 (83%), Gaps = 5/302 (1%)
 Strand = Plus / Plus

                                                                       
Query: 173 ccaagaaaagaacggctcctgttgctccagtagggctatgggacagatttcctacagcta 232
           |||||||||||  ||||| |||||| ||||||||| | |||||||| ||||| ||||| |
Sbjct: 221 ccaagaaaagagtggctcgtgttgcaccagtagggttgtgggacaggtttccgacagcaa 280

                                                                       
Query: 233 gaacagtacagcagatgatggagacgatggagagaatgatggaagacccttttgcctata 292
           ||||||| |||||||||||||| || ||||| ||||||||||| ||||| ||| | ||  
Sbjct: 281 gaacagttcagcagatgatggaaacaatggaaagaatgatggatgacccatttacatact 340

                                                                       
Query: 293 cgggtacttggccatcagagccaccatcaccagttgaacgaagtgggtatagcagaggaa 352
           |  | |  |||||| |    ||| |  ||||| ||||| ||||||| ||| | |||||||
Sbjct: 341 ctagcagctggccaact---ccagctgcaccaattgaaggaagtggatatggaagaggaa 397

                                                                       
Query: 353 ggactccatgggagataaaagaaggagaaacagagtacaagatgagatttgacatgcctg 412
           |||| |||||||||||||||||||||||||  || ||||| ||||| |||||||||||||
Sbjct: 398 ggacgccatgggagataaaagaaggagaaaatgaatacaaaatgaggtttgacatgcctg 457

                                                                       
Query: 413 gaatgactaaagaagatgtgaaggtatggg-tgaagagaagatgttggtt-tgaaagcag 470
           ||||||| ||||||||||| ||||| |||| ||| ||||||||||||||| |||||||||
Sbjct: 458 gaatgaccaaagaagatgttaaggtgtgggttgaggagaagatgttggttgtgaaagcag 517

             
Query: 471 ag 472
           ||
Sbjct: 518 ag 519



 Score = 77.8 bits (39), Expect = 7e-14
 Identities = 93/111 (83%)
 Strand = Plus / Plus

                                                                       
Query: 523 agaagaagaagatggaggatggtctgctaagagctatgggaaatatagatgcagaattgc 582
           |||||||||||| | ||  |||||||||||||||||||| |  || ||  | ||||||||
Sbjct: 585 agaagaagaagaagaagagtggtctgctaagagctatggaaggtacagtagtagaattgc 644

                                                              
Query: 583 attacctgagaacatacagtttgagaaaataaaagttgaggttaaagatgg 633
            || |||||||| || || |||||||| ||||||| |||||||||||||||
Sbjct: 645 gttgcctgagaatattcaatttgagaagataaaagctgaggttaaagatgg 695


>30186.m001320 ubiquitin-protein ligase, putative
          Length = 2997

 Score = 52.0 bits (26), Expect = 4e-06
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                 
Query: 8   aagctctttccaatttaagcttttctcttcctttatcatcaaaaagcacttctg 61
           |||| ||||||||||| ||||| ||||| |||| |||||||||| |||| ||||
Sbjct: 183 aagccctttccaatttgagcttatctctaccttcatcatcaaaaggcacctctg 130