Jatropha Genome Database

JcCB0133611.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0133611.20 + phase: 2 /partial
         (523 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29904.m002990 potassium channel beta, putative                        549   e-156

>29904.m002990 potassium channel beta, putative
          Length = 987

 Score =  549 bits (277), Expect = e-156
 Identities = 445/501 (88%)
 Strand = Plus / Plus

                                                                       
Query: 5   gactcatcaacaccaattgaagaaacggtgagggcaatgaattatgtgattgataagggg 64
           |||||||| |||||||||||||||||  | |||||||||||| |||||||||||||||||
Sbjct: 373 gactcatcgacaccaattgaagaaacaataagggcaatgaatcatgtgattgataagggg 432

                                                                       
Query: 65  tgggcattttattggggcactagtgagtggtctgcccagcagatcactgaagcgtggggc 124
           ||||| ||||||||||| |||||||||||||| || || |||||||||||||| ||||||
Sbjct: 433 tgggcgttttattggggaactagtgagtggtcagcacaacagatcactgaagcatggggc 492

                                                                       
Query: 125 attgcagaaagattggacttggtgggaccaattgttgagcaaccagagtataatctacta 184
           |||||||||||  |||||||||| ||||| ||||| ||||| |||||||| ||| | || 
Sbjct: 493 attgcagaaaggctggacttggtaggacctattgtggagcagccagagtacaatttgctg 552

                                                                       
Query: 185 tcaaggcacaaggtcgagtcagagtatctccctctatataccaactatggccttggtctc 244
           || || |||||||| ||||||||||| ||||||||||| |||||||||||||| ||||||
Sbjct: 553 tctagacacaaggtagagtcagagtacctccctctatacaccaactatggcctgggtctc 612

                                                                       
Query: 245 accacatggagtccacttgcatctggggtgctcacaggaaaatacagcaagggagctata 304
           || || |||||||| ||||||||||| |||||||| ||||||||||||| ||||||||||
Sbjct: 613 actacttggagtcctcttgcatctggagtgctcactggaaaatacagcaggggagctata 672

                                                                       
Query: 305 cctcctgatagtcggtttgctttagaaaattacaaaaaccttgctagccgatcactggtt 364
           ||||||||||| |||||||| || ||||| || || || ||||||||||| || ||| ||
Sbjct: 673 cctcctgatagccggtttgccttggaaaactataagaatcttgctagccggtccctgatt 732

                                                                       
Query: 365 gacgatgttttgaaaaaggttaatggactgaagccaattgctgatgaactgggtgtgcct 424
           || |||||| |||| ||||||||||| || |||||||||||||| ||||| |||||||||
Sbjct: 733 gatgatgttctgaagaaggttaatgggctaaagccaattgctgacgaactcggtgtgcct 792

                                                                       
Query: 425 ttatctcaacttgcaattgcatggtgtgctgctaatcccaatgtctcatcagttattact 484
           |||||||||||||| || |||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 793 ttatctcaacttgctatagcatggtgtgctgctaatccaaatgtctcatcagttatcact 852

                                
Query: 485 ggtgctacaagggagtctcag 505
           |||||||||| ||| ||||||
Sbjct: 853 ggtgctacaaaggaatctcag 873