Jatropha Genome Database

JcCB0133611.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0133611.10 - phase: 0 /pseudo/partial
         (458 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29904.m002990 potassium channel beta, putative                        163   1e-39

>29904.m002990 potassium channel beta, putative
          Length = 987

 Score =  163 bits (82), Expect = 1e-39
 Identities = 202/242 (83%)
 Strand = Plus / Minus

                                                                       
Query: 34  tcattagggccagaacctccccaaaagatcttagtagacacgacgacatccgaccgcttc 93
           |||||||| |||||||| |||||||||||||| ||||| || || | ||||||||| |||
Sbjct: 275 tcattaggaccagaaccaccccaaaagatctttgtagaaactactatatccgaccgtttc 216

                                                                       
Query: 94  catccgagctcgcggatcgcctggcccatgatctcctcagctcttccattggcataaacc 153
           || || || || |||||||| || ||||| ||||| || || |||||||| |||||||||
Sbjct: 215 cacccaagttcacggatcgcttgacccataatctcttctgcccttccatttgcataaacc 156

                                                                       
Query: 154 tctgcgttatcaaagaaattaacaccatggtctctgcaacactgtaagagggactttgcc 213
           ||||||||||||||||| || ||||||||||||||||||||||| || |  ||||| || 
Sbjct: 155 tctgcgttatcaaagaagttgacaccatggtctctgcaacactgcaataatgacttcgct 96

                                                                       
Query: 214 tccttgacatcgagctggttaccaaagcttacccaagcgccataggagagctggctgacc 273
           || || ||||| || ||||| || || |||||||| || ||||| || ||||| || |||
Sbjct: 95  tctttcacatctagttggttcccgaaacttacccatgctccatatgaaagctgactcacc 36

             
Query: 274 tt 275
           ||
Sbjct: 35  tt 34