Jatropha Genome Database

JcCB0127031.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0127031.10 + phase: 0 
         (594 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29790.m000843 Transcription factor BIM1, putative                     176   1e-43

>29790.m000843 Transcription factor BIM1, putative
          Length = 936

 Score =  176 bits (89), Expect = 1e-43
 Identities = 214/256 (83%), Gaps = 6/256 (2%)
 Strand = Plus / Plus

                                                                       
Query: 215 ctgtgcaggaatctgtttctgatgctgagaatatggaattccaacttcaaccccaacaat 274
           ||||||||||||||||||||||||||||||| |||| || |||||||||| | |||  ||
Sbjct: 527 ctgtgcaggaatctgtttctgatgctgagaacatggcataccaacttcaatcacaattat 586

                                                                       
Query: 275 ggcatggccgaccatgtgctactgagtgtgatgccccaaacaatacggtgaatggacaag 334
           |||| || | ||||||||||| ||| |||   ||||| |  ||||| ||||||||||| |
Sbjct: 587 ggcagggtcaaccatgtgctagtgaatgtaccgccccgagtaatacagtgaatggacagg 646

                                                                       
Query: 335 aggagccaatgggtgaaactggatcagatagcatctcaagtacatattctcaagggatat 394
           |||| | |||| || ||| ||||| || |      |||||||||| ||||||||||||||
Sbjct: 647 aggaacaaatgagtaaaagtggattagtt------tcaagtacattttctcaagggatat 700

                                                                       
Query: 395 tggatactctgacccaagcactgcaatcttctggtgtggatttgtctcagacaaacatat 454
           |||||| ||| |||||||||||||||||||| ||||||||||| || ||||||| ||| |
Sbjct: 701 tggataatctaacccaagcactgcaatcttcgggtgtggatttatcacagacaagcatct 760

                           
Query: 455 cagtgcaaattgatgt 470
           |||| |||||||||||
Sbjct: 761 cagtccaaattgatgt 776



 Score = 71.9 bits (36), Expect = 4e-12
 Identities = 90/108 (83%)
 Strand = Plus / Plus

                                                                       
Query: 15  gaaaaatcaccatcctcctgtagaagctctattggatcatcctcaaggattgaagaatgg 74
           ||||||||||||| || |||| |||  |||  |||||||| | ||||  |||||||||||
Sbjct: 345 gaaaaatcaccatacttctgttgaaagtctggtggatcattcgcaagttttgaagaatgg 404

                                                           
Query: 75  ttctgctcatgagaatactgcaatactcacaaatgtacataactcaat 122
           |||||||| ||||   ||||| || |||||||||||||| ||||||||
Sbjct: 405 ttctgctcctgaggtgactgccatgctcacaaatgtacacaactcaat 452