Jatropha Genome Database

JcCB0126561.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0126561.10 + phase: 2 /pseudo/partial
         (532 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28623.m000407 GDP mannose-4,6-dehydratase, putative                   143   1e-33

>28623.m000407 GDP mannose-4,6-dehydratase, putative
          Length = 714

 Score =  143 bits (72), Expect = 1e-33
 Identities = 162/192 (84%)
 Strand = Plus / Plus

                                                                       
Query: 312 tgaattgaaaagaccatgtggtgattgataaaaggtactttagaccagcagaggttgata 371
           ||||||| |||||||||||||||||||| || ||||| || || || || || |||||||
Sbjct: 407 tgaattggaaagaccatgtggtgattgacaagaggtatttcaggcctgctgaagttgata 466

                                                                       
Query: 372 atttgaaaggagattctagtaacgcaagaaaagttcttggatggaagccaaaagttgggt 431
           | |||||||| ||||| || || || || ||||||||||| ||||| |||||||| || |
Sbjct: 467 acttgaaaggggattcaagcaaggctaggaaagttcttggctggaaaccaaaagtgggat 526

                                                                       
Query: 432 ttgagcaactggttaagacgatggtggatgaagatattgagtttgctaaaagagagaaga 491
           |||||||  |||| |||| |||||| ||||||||||||||||| ||||| || |||||  
Sbjct: 527 ttgagcagttggtgaagatgatggttgatgaagatattgagttagctaagagggagaaag 586

                       
Query: 492 tgcttgttgatg 503
           ||||||||||||
Sbjct: 587 tgcttgttgatg 598



 Score = 61.9 bits (31), Expect = 4e-09
 Identities = 79/95 (83%)
 Strand = Plus / Plus

                                                                       
Query: 83  ccatttcatcctaaatctccatacgcagtgctgaaatgtgttgcgcattggtatacagtt 142
           ||||||||||| | |||||||||||||| |  |||||| | ||| |||||||| || |||
Sbjct: 40  ccatttcatccaagatctccatacgcagcgtcgaaatgcgctgcccattggtacactgtt 99

                                              
Query: 143 aattaccatgaggcttaccggttgtttgcttgtaa 177
           ||||||   ||||| ||| |||||||||| |||||
Sbjct: 100 aattacagggaggcgtacgggttgtttgcctgtaa 134