Jatropha Genome Database
- JcCB0123131.20
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0123131.20 + phase: 0
(1572 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29830.m001445 rab GDP-dissociation inhibitor, putative 482 e-135
>29830.m001445 rab GDP-dissociation inhibitor, putative
Length = 1656
Score = 482 bits (243), Expect = e-135
Identities = 694/843 (82%), Gaps = 16/843 (1%)
Strand = Plus / Plus
Query: 683 aggatttggagagtccttttgttgagttcttgactaaaatgaagttgtcttccaagatta 742
|||||||||||||||| ||||| || ||||| | |||||||||| ||||||| |||||||
Sbjct: 647 aggatttggagagtccgtttgtggacttcttaaataaaatgaagctgtcttcaaagatta 706
Query: 743 aatcgattatcctttatgctattgccatggcagattatgatcaagacaacataggag--- 799
|||||||||| || || || || | ||||||||||| ||||||||| |||| ||||
Sbjct: 707 aatcgattatactgtacgcaatagtcatggcagattgtgatcaagagaacaccggagggg 766
Query: 800 catgtaaaggtttactcaagacaaaagatggaatagaccgattggctacgtatcaatcat 859
|| ||||| |||||| ||||| ||||||||||| || ||||||||| |||||| ||||
Sbjct: 767 caaataaagatttacttaagacgaaagatggaattgatcgattggctctgtatcagtcat 826
Query: 860 cagttggcaggtttacgaatgcacttggggcttttatttatcctatttatggtcaagggg 919
| ||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| |
Sbjct: 827 ctattggcaggtttacaaatgcacttggagcttttatttatcctatatatggtcaaggag 886
Query: 920 aaatgccaccagccttttgtcgccgtgctgcagtcaaaggcagtatctatgttttacgaa 979
|| |||||||||||||||| || ||||||||||| |||||| |||| || ||||| ||||
Sbjct: 887 aactgccaccagccttttgccgtcgtgctgcagtgaaaggctgtatttacgttttgcgaa 946
Query: 980 tgccagtgattgctttgcttatggacaagagtagcggcgggtacaaaggtataagattgg 1039
|||| ||| ||||| |||| |||||||||| || ||| |||||||||||||| ||||
Sbjct: 947 tgcccgtggttgctctgctaatggacaagaataatggcaattacaaaggtataaggttgg 1006
Query: 1040 cttctggtcaggacatatttagccagaagctcgtcctggacccatccttgacagttccat 1099
||||||| ||||| |||| ||| |||||||| || ||||| || ||||| ||||||||||
Sbjct: 1007 cttctgggcaggaaatatatagtcagaagctagttctggatccctcctttacagttccat 1066
Query: 1100 caccctcagcttctccattggattctccgcatgaaaattttcaatttttatgtgtgagag 1159
| || |||| |||| ||| ||||||| ||| ||||| |||||||||
Sbjct: 1067 ---------cctccccatcggatcctctacatgaaagcttttgctttttgagtgtgagag 1117
Query: 1160 atgttaaacagaaggtggctagaggaatatgcattataaggagttccttgaagccagata 1219
|||||||||| ||||||||||| | ||||||||||| | ||||| | ||||| || |
Sbjct: 1118 atgttaaacaaaaggtggctagggcaatatgcattaccaaatgttccctaaagccggaca 1177
Query: 1220 tagcaaattttcttgttgtatatcctcctcgatccttgtaccctgagcagatgacatcaa 1279
| |||||||||| | ||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 1178 catcaaattttctggctgtatatcctcctcgatccttgtaccctgagcagagtacatcca 1237
Query: 1280 ttcgagccctccagataggtggcagtttggcggtttgtcctccagatacgtttgtactgt 1339
||||||| || ||||| ||||||||||| || ||||||||| || | | |||| | || |
Sbjct: 1238 ttcgagctcttcagatgggtggcagtttagctgtttgtcctacaaacatgtttattcttt 1297
Query: 1340 atctttcagctttgtgtgatgatgtccatcaggggaagaagctattaaatgcagccatga 1399
||||||||||||| ||||||||||||||||| || |||||| || ||||| |||||||||
Sbjct: 1298 atctttcagctttatgtgatgatgtccatcaaggaaagaagttactaaatacagccatga 1357
Query: 1400 atgcacttctcacttgtcctgattctggacaacctgaaactagttccctagatcaaactg 1459
|||| ||||| ||| | | ||||||| | | ||||||| | ||| || ||||||||
Sbjct: 1358 atgctcttctgtcttctaccgattctgaaaatcctgaaagctgctccacaggtcaaactg 1417
Query: 1460 agaatgcggtag--caaagcccatattactttggagtgcgttgtatattcaagagctgac 1517
||||| | | || ||||| ||| |||||||||||||| ||||||||||| ||||||||
Sbjct: 1418 agaatacagaagttcaaag--catgttactttggagtgcattgtatattcaggagctgac 1475
Query: 1518 tac 1520
|||
Sbjct: 1476 tac 1478
Score = 172 bits (87), Expect = 4e-42
Identities = 147/167 (88%)
Strand = Plus / Plus
Query: 422 caggagcaagtcaatacgttgagttcaagagtatagatgcaagttttgtaggtgatgaga 481
||||||| | |||||| ||||| || |||||||||||||| |||||||| ||||||||||
Sbjct: 416 caggagctaatcaatatgttgaatttaagagtatagatgcgagttttgttggtgatgaga 475
Query: 482 atggaaatttatggaatgtgccggattcaagggcttctatattcaaagataagagcttga 541
|||| || ||||||||||| || ||||| |||||| ||||||| ||||||||||||||||
Sbjct: 476 atgggaaattatggaatgttccagattctagggctgctatatttaaagataagagcttga 535
Query: 542 gcttgatggagaagaatcggttgatgaggttttttaagttggtgcaa 588
||||||||||||||||| |||| ||| | ||||||||| | ||||||
Sbjct: 536 gcttgatggagaagaataggttaatgcgattttttaagctcgtgcaa 582
Score = 73.8 bits (37), Expect = 3e-12
Identities = 88/105 (83%)
Strand = Plus / Plus
Query: 102 cgcttctggaaaatcagtactacaccttgaccataaccacttctatggatcccacttttc 161
|||||| |||||||| ||||| ||| | ||||| ||| | |||||||| || ||||| ||
Sbjct: 102 cgcttcgggaaaatccgtactccacatcgaccagaacaaattctatggctctcacttctc 161
Query: 162 ctctctctccatccccgacctcacctctttcctcaattccaattc 206
||| ||||| ||||| || |||||||||||||| ||||| |||||
Sbjct: 162 ctccctctcaatcccagatctcacctctttccttaattctaattc 206