Jatropha Genome Database

JcCB0121711.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0121711.20 - phase: 0 /pseudo/partial
         (648 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29989.m000425 conserved hypothetical protein                          347   5e-95

>29989.m000425 conserved hypothetical protein
          Length = 384

 Score =  347 bits (175), Expect = 5e-95
 Identities = 313/359 (87%)
 Strand = Plus / Plus

                                                                       
Query: 286 gaaaaatcactacagattgtactggtgagagatgttgatggtaaaactttttgggatgcc 345
           ||||||||| ||| ||||||| |||||||||| || ||||||||||||||||||||||||
Sbjct: 19  gaaaaatcattactgattgtattggtgagagacgtcgatggtaaaactttttgggatgcc 78

                                                                       
Query: 346 ttggatgatgccatctccccaagaatcaaagcacccactctagttgatgaatctgctttg 405
           ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||
Sbjct: 79  ttggatgatgccatctccccaagaatcgaagcacccactccagttgatgaatctgcattg 138

                                                                       
Query: 406 tccgcatttcgtagtgtttttcaagatcgggctcttaagaaaggaacattcatattttta 465
           ||| |||| |||||| | || |||| |||  |||||||||||||||||||||||||||| 
Sbjct: 139 tccacattccgtagtatcttccaaggtcgacctcttaagaaaggaacattcatatttttg 198

                                                                       
Query: 466 acatggttggatccctcaaaattgcttatctgtgtctcttcagatgggataccatctagt 525
           ||||||||||||||||||||| |||| || ||| |||| ||||||||||| |   ||| |
Sbjct: 199 acatggttggatccctcaaaaatgctaatttgtatctcatcagatgggatgcaggctact 258

                                                                       
Query: 526 gtggatgctacaatagagtccgcaaatgttgcttctgcactttttgatgtatttttcgga 585
           |||||||||||||| |||||  | |||||  ||| ||| |||||||||||||||||| | 
Sbjct: 259 gtggatgctacaatcgagtcaacgaatgtcacttttgccctttttgatgtatttttcagt 318

                                                                      
Query: 586 gatgcttcagtttctccttcattgaaagcttcagtgaccaccgggctggcaacaattct 644
           |||||| | |||||||||||  |||||||||||||  |||  || ||||||||||||||
Sbjct: 319 gatgctcctgtttctccttctctgaaagcttcagttgccaatggactggcaacaattct 377