Jatropha Genome Database
- JcCB0121611.20
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0121611.20 - phase: 1 /partial
(1070 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
30032.m000454 pentatricopeptide repeat-containing protein, putative 404 e-112
29737.m001266 pentatricopeptide repeat-containing protein, putative 54 2e-06
>30032.m000454 pentatricopeptide repeat-containing protein, putative
Length = 1080
Score = 404 bits (204), Expect = e-112
Identities = 582/708 (82%)
Strand = Plus / Plus
Query: 19 tgtttgttcaaatgccggagaggaacttaacttcctggaatgcgatggttggtggattgg 78
|||||| ||||||||| || ||||| ||| || |||||||| ||| ||| ||| | ||
Sbjct: 299 tgtttgatcaaatgcctgaaaggaatctaaagtcttggaatgctatgattgatggttggg 358
Query: 79 tgaaaggaggggatttgattaatgctaggaaggtgtttgatgacatgcctgaaagggatg 138
| |||| |||||||||| || ||||||||||||||||||||| |||||||| ||| |||
Sbjct: 359 tcaaagcaggggatttgcttcttgctaggaaggtgtttgatgaaatgcctgagaggaatg 418
Query: 139 ttgtttcttttactgttatgattgatggctatgcaaaggtaggggatatagcatctgcca 198
||||||| ||||| |||||||||||||| ||||| |||| |||||||| || |||| |
Sbjct: 419 ttgtttcatttacggttatgattgatgggtatgccaaggctggggatatgacaactgcaa 478
Query: 199 gagctttgtttgataaagctccgaaaagagatgcctttttgtggtcagtattaatatcgg 258
| | ||||||||| | ||||||||| ||||||| || ||||||| || || || |
Sbjct: 479 gggatttgtttgagagagctccgaagagagatgtgattgcatggtcagcgttgatttcag 538
Query: 259 gatatgctcaaaatgggctcccaaacgaggcattgaagatattccaaggaatggagttaa 318
| |||||||| ||||||| || || ||||| || |||||| | | |||||||| ||
Sbjct: 539 gttatgctcagaatgggcagcctaatgaggctgtgcggatatttcttgaaatggagtcaa 598
Query: 319 tgaatgttaagccagatgagtatataatggttagcttgatgtcagcatgttctcaagtgg 378
|||||||||||| ||||| ||||||||||| || || ||||| || ||||||||| |||
Sbjct: 599 agaatgttaagcctgatgaatatataatggtaagtttaatgtctgcttgttctcaattgg 658
Query: 379 gtaatttagatttagcaaaatgggttgactgttatttgagtcagagctcgattgatattg 438
||| || |||||||| | ||||| ||| ||||||||||| | ||||| ||||||||||
Sbjct: 659 gtagcttggatttagctagatgggctgattgttatttgagcaaaagctcaattgatattg 718
Query: 439 gtcaaactcatgttgttgctgcacttattgacatgaatgcaaagtgcgggaacatggata 498
||||||| |||||| ||||||| | ||||||||||| || ||||| ||||| ||||| |
Sbjct: 719 gtcaaacccatgttattgctgctttaattgacatgaacgcgaagtgtgggaatatggaaa 778
Query: 499 gagcaaataagttatttgaagaaatgcctaaaagggaccttttttcttattgttctatga 558
||||||| ||||| |||||||| ||||||||| | ||||| || | |||||||||||||
Sbjct: 779 gagcaaaaaagttgtttgaagagatgcctaaacgcgacctaattacatattgttctatga 838
Query: 559 tacaaggattgtccattcatggatatgctgaacaggctgtgggattattcaataaaatgc 618
||||||||||||| |||||||| | ||||| |||||||| || |||||||||| ||||
Sbjct: 839 tacaaggattgtcgattcatgggtgcgctgagcaggctgttgggttattcaatagaatgt 898
Query: 619 taaatgagggattaattccagataatgcagcatttactgtcattttgacagcttgtagcc 678
|||||||| | |||||||||||| | || ||||||||||| | |||||||| |||||||
Sbjct: 899 taaatgagagcttaattccagatgaggctgcatttactgttgtattgacagcatgtagcc 958
Query: 679 atggaaggcttgttgaggagggtaagcattactttgaaaccatgaaaa 726
||| | |||||||| ||||||| ||| |||||||||||||||||||
Sbjct: 959 ggggaggtcttgttgacgagggtaggcactactttgaaaccatgaaaa 1006
>29737.m001266 pentatricopeptide repeat-containing protein, putative
Length = 1668
Score = 54.0 bits (27), Expect = 2e-06
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 100 atgctaggaaggtgtttgatgacatgcctgaaagggatgttgt 142
|||||| ||||||||||||||| |||| |||||| ||||||||
Sbjct: 188 atgctaagaaggtgtttgatgaaatgcttgaaagagatgttgt 230