Jatropha Genome Database

JcCB0113371.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0113371.10 + phase: 2 /partial
         (547 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30040.m000264 orf protein, putative                                   666   0.0  

>30040.m000264 orf protein, putative
          Length = 561

 Score =  666 bits (336), Expect = 0.0
 Identities = 447/484 (92%)
 Strand = Plus / Plus

                                                                       
Query: 37  tgcagtttctaatggtcatgtgaaacgtccacatgatgaagacatacagtccaatgtact 96
           |||||||||||| || ||||| ||||| |||||||||||||||||||| |||||||||||
Sbjct: 69  tgcagtttctaacgggcatgtaaaacggccacatgatgaagacatacaatccaatgtact 128

                                                                       
Query: 97  tgagattgttggatcaaatattcagtctacatacattacatgcccagttgatccagctgc 156
           ||| ||||| ||||||||||| |||||||||||||||||||||||||  || || |||||
Sbjct: 129 tgaaattgtcggatcaaatatccagtctacatacattacatgcccagcggaccctgctgc 188

                                                                       
Query: 157 aactcttggtataaaacttccatttttggttatgattgtgaagaacttgaagaaatactt 216
           ||||||  | |||||||| || |||||||||||||||||||||||| |||||||||||||
Sbjct: 189 aactctcagcataaaactcccgtttttggttatgattgtgaagaacatgaagaaatactt 248

                                                                       
Query: 217 cacatttgagattcaagtgttggatgataagaatgtcagacggcgatttcgagcttctaa 276
           ||| |||||||||||||||||||||||||||||||| || ||||| ||||||||||||||
Sbjct: 249 cacgtttgagattcaagtgttggatgataagaatgttaggcggcgttttcgagcttctaa 308

                                                                       
Query: 277 ctttcaagctattactcgagtgaagccatacatctgcaccatgccactgaagatggatga 336
           ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ctttcaagcaatcactcgagtgaagccatacatctgcaccatgccactgaagatggatga 368

                                                                       
Query: 337 gggctggaatcaaattcagttgaatttggctgattttaccagaagggcctatggaacaaa 396
           ||||||||||||||| ||||||||||||||||||||||| || ||||| |||||||| ||
Sbjct: 369 gggctggaatcaaatccagttgaatttggctgattttactaggagggcatatggaaccaa 428

                                                                       
Query: 397 ttatgttgagactttaagagttcaggttcatgcaaattgccgcctgcggagaatctattt 456
           |||||||||||||||| ||||||||||||||||||| ||||||||| ||||||| |||||
Sbjct: 429 ttatgttgagactttacgagttcaggttcatgcaaactgccgcctgaggagaatatattt 488

                                                                       
Query: 457 ctctgaccgcctctactcagaagaggagctccctccagaatttaaactctaccttccaat 516
           |||||||||||||||||| ||||| || ||||||||||||||||||||||||||||| ||
Sbjct: 489 ctctgaccgcctctactctgaagaagaactccctccagaatttaaactctaccttccgat 548

               
Query: 517 gcag 520
           ||||
Sbjct: 549 gcag 552