Jatropha Genome Database

JcCB0111501.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0111501.20 + phase: 0 /pseudo
         (453 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30190.m010889 coatomer gamma subunit, putative                        549   e-156

>30190.m010889 coatomer gamma subunit, putative
          Length = 2664

 Score =  549 bits (277), Expect = e-156
 Identities = 407/449 (90%), Gaps = 1/449 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggctcagcctctcataaagaaagacgacgaccgcgacgacgaagcggagttctctcca 60
           |||||||||||||||||||||||||| ||||||||||| || |||||||| | |||||||
Sbjct: 1   atggctcagcctctcataaagaaagatgacgaccgcgatgatgaagcggattactctcca 60

                                                                       
Query: 61  tttcttggtattgagaagggtgcagttcttcaggaagccagggttttcaatgaccctcag 120
           ||| | || |||||||||||||| ||||| || ||||| |||||||| |||||||| |||
Sbjct: 61  tttttggggattgagaagggtgctgttctgcaagaagctagggtttttaatgacccccag 120

                                                                       
Query: 121 cttgatccaagaaaatgctctcaggtcattacaaagcttctatatcttctgaaccaagga 180
           |||||  |||||||||||||||||||||| |||||| |||| ||||||||||| ||||||
Sbjct: 121 cttgactcaagaaaatgctctcaggtcatcacaaagattctttatcttctgaatcaagga 180

                                                                       
Query: 181 gaaacattcactaaggttgaagccacagaagttttctttgctgtgacaaagctttttcag 240
           ||  | ||  | ||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 181 gactccttatcaaagattgaagccacagaagttttcttttctgtgacaaagctttttcag 240

                                                                       
Query: 241 tccagggatataggtttaaggagaatggtctatttgatgataaaggaattatccccatca 300
           || || ||| ||| ||| ||||||||||| |||||||| |||||||||||||| ||||||
Sbjct: 241 tcgagagatttagctttgaggagaatggtttatttgattataaaggaattatcgccatca 300

                                                                       
Query: 301 gcagatgaggttataattgtgacaagctcccttatgaaggacatgaatagcaagagtgat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| 
Sbjct: 301 gcagatgaggttataattgtgacaagctcccttatgaaggacatgaatagcaagactgac 360

                                                                       
Query: 361 atgtaccgtgcaaatgctattcgtgtgctttgtcggataacagatggaaccctgctcacc 420
           ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||
Sbjct: 361 atgtaccgtgcaaatgctattcgcgtgctctgtcggataacagatggaaccctgcttacc 420

                                        
Query: 421 caaattgagcgatac-tgaaacaagcaat 448
           ||||||||||||||| |||||||||||||
Sbjct: 421 caaattgagcgatacttgaaacaagcaat 449