Jatropha Genome Database

JcCB0109281.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0109281.10 - phase: 0 
         (714 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29727.m000490 conserved hypothetical protein                          250   1e-65

>29727.m000490 conserved hypothetical protein
          Length = 3267

 Score =  250 bits (126), Expect = 1e-65
 Identities = 397/486 (81%), Gaps = 6/486 (1%)
 Strand = Plus / Plus

                                                                       
Query: 16  agctatttcgatcccgaagatctcacttccagagaacagtttcgccgttatgggaaaagg 75
           |||||||||||||| |||||||||||||| |||||||| ||||||||||| |||||||||
Sbjct: 34  agctatttcgatcctgaagatctcacttcaagagaacaatttcgccgttacgggaaaagg 93

                                                                       
Query: 76  cactcaacttcaagtgtatcgccccataaagacatttcagtgtccaagttcaaggagtct 135
           ||||||  |||||||||||| || ||| ||||   ||| || ||||||||||||||    
Sbjct: 94  cactcagtttcaagtgtatcaccgcatcaagatgcttcggtttccaagttcaaggatgga 153

                                                                       
Query: 136 agactactatacgaggggcagagtatccacagtccgacaaatgctgcacttcttcttgag 195
            | ||  | ||||||||||| ||||| || |||||||| |||||||| |||||||| |||
Sbjct: 154 cggcttttgtacgaggggcatagtatacatagtccgacgaatgctgcgcttcttctcgag 213

                                                                       
Query: 196 aatatcaaacaagagactgatagcattgggtatactgatcactttgggggtacacc---t 252
           |  || ||||||||| ||||||| ||||   | |||||||| ||||   |||||||   |
Sbjct: 214 agcattaaacaagaggctgatagtattg---acactgatcattttgaaagtacaccacct 270

                                                                       
Query: 253 gcaaggacacattctacttttaaaaggagatcgtccattgatagttacggaatttcagag 312
           ||   |||| | ||| ||| |||||| ||| |||||||||||| |  ||| || || || 
Sbjct: 271 gctgcgacaaagtctgcttctaaaagaagaccgtccattgatattcgcggtatctctgac 330

                                                                       
Query: 313 gttgatctgggtgctgattccgtaagaagacatggaagtgaatcacttaaggcttgcaaa 372
           | |||| | ||   ||||||  || || ||| ||||||||| || ||||| ||||| || 
Sbjct: 331 ggtgatttcgggattgattcaataggacgacttggaagtgagtcgcttaaagcttgtaag 390

                                                                       
Query: 373 attgaggatgattcattgacagatattggagagacaatttttggtctatttgcttctctt 432
           || |||||||| ||  | ||||||| |||||||||| |||||||| ||||||| || |||
Sbjct: 391 atcgaggatgaatcgctaacagatagtggagagacagtttttggtttatttgcgtcactt 450

                                                                       
Query: 433 cttgattcagctattcaagggttgatgcctattcctgatttgattttaagatttgagaaa 492
           |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 451 cttgattctgctattcaagggttgatgcctattcctgatttgattttgagatttgagaaa 510

                 
Query: 493 tcatgc 498
           ||||||
Sbjct: 511 tcatgc 516