Jatropha Genome Database
- JcCB0106211.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0106211.10 + phase: 0 /partial
(665 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
28094.m000179 pentatricopeptide repeat-containing protein, putative 662 0.0
>28094.m000179 pentatricopeptide repeat-containing protein, putative
Length = 1662
Score = 662 bits (334), Expect = 0.0
Identities = 562/638 (88%)
Strand = Plus / Plus
Query: 28 tggtgggacttcagtgaaatggattcgatcaggcttatcacagctcatggaaagcaaggg 87
||||||||||| | |||||||||||| | | |||||| || ||| ||||||||||||||
Sbjct: 403 tggtgggactttaatgaaatggattcactgatgcttataacggcttatggaaagcaaggg 462
Query: 88 aacttcaatgaggctgagaagattttaacttatatgaataagatgggctatgcaccgaat 147
||||||| || ||||||||| | |||| ||||||||| ||||||||||||| || |||
Sbjct: 463 aacttcagtgcagctgagaaggtattaagttatatgaacaagatgggctatgtgcccaat 522
Query: 148 gttgtatcccatactgcccttatggaggcctatggaagaggaggtcggtataataatgct 207
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 523 gttgtatcccatactgcccttatggaggcctatggaagaggagctcgatataataatgct 582
Query: 208 gaagccatattccgaaggatgcaaactttgggacctgagccttcagctttgacttatcaa 267
|||||||| || || ||||||||| ||| || || ||||||| ||| |||| ||||||
Sbjct: 583 gaagccatctttcggaggatgcaatcttcaggtcccaagccttctgctgtgacgtatcaa 642
Query: 268 ataatactaaaaacatttgttgagggaaacaagtttaaggaagctgaagaagtctttgag 327
||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 643 ataatactaaaaaattttgtcgagggaaacaagtttaaggaagctgaagaagtttttgag 702
Query: 328 cctctattgagtgacgaaagggcacctttaaaaccagatcagaaaatgttccacatgatg 387
|||| ||| || || | |||||||||||||||| |||||||||||||||||||||
Sbjct: 703 actcttttggacgaggagaaatcacctttaaaaccagaccagaaaatgttccacatgatg 762
Query: 388 atatacatgtatagaaaagctgggaattatgaaaaagctcgtaaaatgttttcactaatg 447
|| |||||| ||||||||||||||||||||||||| |||||| |||| ||| ||||||||
Sbjct: 763 atttacatgcatagaaaagctgggaattatgaaaaggctcgtcaaatatttgcactaatg 822
Query: 448 acccagcgagaaatcccacattctactgtcacttataatagtttaatgtcattcgagacc 507
|| ||||||| | | ||| | ||||| ||||||||||| ||| |||||||||| ||||||
Sbjct: 823 actcagcgaggagttccaaaatctaccgtcacttataacagtctaatgtcatttgagacc 882
Query: 508 aattacaaggaagtttcaaagatttatgaccagatgcaaagatctggtcttcaacctgat 567
||||||||||||||||||||||| ||||| |||||||||||||| || ||||||||||||
Sbjct: 883 aattacaaggaagtttcaaagatctatgatcagatgcaaagatccggccttcaacctgat 942
Query: 568 gttgtgagctatgcattactcatcaatgcttatggaaaagctcgaagggaagaagaagct 627
|| | ||||||||||||||||||||||||||||| |||||||| |||||||| ||||||
Sbjct: 943 gtcataagctatgcattactcatcaatgcttatgggaaagctcggagggaagatgaagct 1002
Query: 628 ttggcagtttttgaggagatgctggatgctggtgtcag 665
||||| ||||| ||||||||||||||||||||||||||
Sbjct: 1003 ttggctgttttcgaggagatgctggatgctggtgtcag 1040