Jatropha Genome Database
- JcCB0105731.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0105731.10 + phase: 0 /partial
(339 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29628.m000763 signal recognition particle 19 kD protein, putative 303 4e-82
29889.m003376 signal recognition particle 19 kD protein, putative 299 5e-81
>29628.m000763 signal recognition particle 19 kD protein, putative
Length = 411
Score = 303 bits (153), Expect = 4e-82
Identities = 293/337 (86%), Gaps = 2/337 (0%)
Strand = Plus / Plus
Query: 4 accatagctgaaggcaggcgaatcagtactgccaaggcttgcgaaaatccaacctgtgtt 63
||||| ||| ||||||||||||| | ||| ||| |||||||||||||| || ||||||
Sbjct: 73 accattgctcaaggcaggcgaatttgcactagcaaagcttgcgaaaatcctacttgtgtt 132
Query: 64 gagattggtgattgctgcagccatctcaaagtcccttttgccaatgagattgacaaggca 123
|||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||
Sbjct: 133 gagattggtgattgctgcagccatctcaaactcccttttgccattgagattgacaaagca 192
Query: 124 tatccacgggatttcatgcaagtaggaagggtgagggtattgctgaagagggaagatggg 183
||||| || |||||||||||| |||| |||||||| || |||||||| |||| ||||||
Sbjct: 193 tatccccgtgatttcatgcaaatagggagggtgagagttttgctgaaaaggggagatgga 252
Query: 184 actttgtacaacccagccattcctactagaaaacagctaatgctccatattgcagcgctg 243
|||||||| || |||||||||||||| ||||||||||||||||| ||| |||| | ||
Sbjct: 253 actttgtataatccagccattcctaccagaaaacagctaatgctgcatgttgctgaattg 312
Query: 244 gtgcctaggcatccagggaggactaagaagcaggagcctgtcttc-acatctggcgttgg 302
|||||||||||||| ||||||||||||||||||||||||| |||| || || | |||
Sbjct: 313 gtgcctaggcatcctgggaggactaagaagcaggagcctg-cttctacgtcaaatgctgg 371
Query: 303 accatccaagtctgggaaaggtgggagaaagaagaga 339
| |||||||||||||||| ||||||| |||||||||
Sbjct: 372 aacatccaagtctgggaagggtgggaagaagaagaga 408
>29889.m003376 signal recognition particle 19 kD protein, putative
Length = 411
Score = 299 bits (151), Expect = 5e-81
Identities = 285/327 (87%), Gaps = 2/327 (0%)
Strand = Plus / Plus
Query: 14 aaggcaggcgaatcagtactgccaaggcttgcgaaaatccaacctgtgttgagattggtg 73
||||||||||||| | ||| | || |||||||||||||| || ||||||||||||||||
Sbjct: 83 aaggcaggcgaatttgcactactaaagcttgcgaaaatcctacttgtgttgagattggtg 142
Query: 74 attgctgcagccatctcaaagtcccttttgccaatgagattgacaaggcatatccacggg 133
|||||||||||||||||||| |||||||||||| |||||||||||| |||||||| || |
Sbjct: 143 attgctgcagccatctcaaactcccttttgccattgagattgacaaagcatatccccgtg 202
Query: 134 atttcatgcaagtaggaagggtgagggtattgctgaagagggaagatgggactttgtaca 193
||||||||||| |||| |||||||| || |||||||| ||||||||||| |||||||| |
Sbjct: 203 atttcatgcaaatagggagggtgagagtgttgctgaaaagggaagatggaactttgtata 262
Query: 194 acccagccattcctactagaaaacagctaatgctccatattgcagcgctggtgcctaggc 253
| |||||||||||||| ||||||||||||||||||||| |||| | | ||||||| ||||
Sbjct: 263 atccagccattcctaccagaaaacagctaatgctccatgttgctgagttggtgcccaggc 322
Query: 254 atccagggaggactaagaagcaggagcctgtcttc-acatctggcgttggaccatccaag 312
| || ||||||||||||||||||||| ||| |||| || || | |||| ||||||||
Sbjct: 323 accctgggaggactaagaagcaggagtctg-cttctacgtcaaatgctggaacatccaag 381
Query: 313 tctgggaaaggtgggagaaagaagaga 339
|||||||| ||||||| |||||||||
Sbjct: 382 tctgggaagggtgggaagaagaagaga 408