Jatropha Genome Database

JcCB0103991.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0103991.20 - phase: 1 /partial
         (290 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29680.m001661 hypothetical protein                                    202   8e-52

>29680.m001661 hypothetical protein
          Length = 3489

 Score =  202 bits (102), Expect = 8e-52
 Identities = 198/230 (86%)
 Strand = Plus / Plus

                                                                        
Query: 40   ataatgaaattttttatagtgggcaaagctttgctctacccactggggagattgatctag 99
            |||||||||| |||||||| ||||| |||| | |||||||| |||| | ||||  | |||
Sbjct: 3236 ataatgaaatgttttatagcgggcagagctctcctctaccccctggagggattcctttag 3295

                                                                        
Query: 100  attctcttgcaaatgaggtttctgatttgaatgagaggttgaaagcgctcgaggcagaca 159
            |||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 3296 attctcttgcaaatgaagtttctgatctgaatgagaggttgaaagcactcgaggcagaca 3355

                                                                        
Query: 160  ggatttttcttgagcacagcatgaactcaatcagaggtggacaggagggagttcaattcg 219
            ||| ||| |||||||||||||| ||||| ||||||  |||| | |||||| |||| ||| 
Sbjct: 3356 ggaatttccttgagcacagcatcaactcgatcagaaatggagaagagggacttcagttca 3415

                                                              
Query: 220  ttcaagagatagcatttcacttgaaagaattaagaaggatagggataaga 269
            ||||||||||||||| |||| |||||||| |  ||||||| || ||||||
Sbjct: 3416 ttcaagagatagcatctcacctgaaagaactgcgaaggattggaataaga 3465