Jatropha Genome Database

JcCB0102421.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0102421.20 + phase: 0 /pseudo
         (743 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30174.m008985 pentatricopeptide repeat-containing protein, putative   327   5e-89

>30174.m008985 pentatricopeptide repeat-containing protein, putative
          Length = 1284

 Score =  327 bits (165), Expect = 5e-89
 Identities = 396/473 (83%)
 Strand = Plus / Plus

                                                                       
Query: 230 tactggagatgaaatcccaaggatatgtgcccagcaactctaccctttcagctatgatga 289
           |||||||||||||||||||||| ||||| | || |||| ||||||||||||||||  || 
Sbjct: 245 tactggagatgaaatcccaaggctatgtactcaacaaccctaccctttcagctattctgc 304

                                                                       
Query: 290 tttgttatgctgaaaatggccttctccctcaagctcaatcaatatgggaggaaatcttga 349
           ||||||||||||| ||||| |||||||||||||||||  | |||||| || | ||  |||
Sbjct: 305 tttgttatgctgacaatggacttctccctcaagctcaggctatatggaagcacatgctga 364

                                                                       
Query: 350 gtacttcttttgagcctagtattcaaatagtttcagaattaattagcgcttatgggaaat 409
            |  |||||||  ||||||||| |||||||||||    || |||   |||||| | ||  
Sbjct: 365 atggttcttttacgcctagtatacaaatagtttctaggttgattgatgcttatagtaaga 424

                                                                       
Query: 410 ctggacaatttaatgaagtaaagaaaattctggaccaattaagttatagtaatttcagct 469
             ||||| ||||||||||| | ||| || |||||||| ||||||||||||||||||||||
Sbjct: 425 agggacattttaatgaagttatgaatatcctggaccagttaagttatagtaatttcagct 484

                                                                       
Query: 470 cgttacatgaggcgtattcgctggctatctcttgttttggaaacggagggcagattcaat 529
            |||||||||||| || || || |||||||| || |||||||| ||||| ||| ||||  
Sbjct: 485 tgttacatgaggcttactctcttgctatctcgtgctttggaaagggaggacagcttcagc 544

                                                                       
Query: 530 tgatggaaaatacattgaaggagatggtttcgaggggtttctcagtagactttgctactg 589
           ||||||||||  | |||||||| ||||| | |||||| ||| ||||||||| ||| || |
Sbjct: 545 tgatggaaaacgcgttgaaggatatggtattgaggggcttcccagtagactatgccaccg 604

                                                                       
Query: 590 ggaatacttttatcaaatattatagtattcatggctctttgacggaaatggaatctgctt 649
           ||||| ||||||||| |||||| ||||||||||| |||||||| || |||||||||||||
Sbjct: 605 ggaatgcttttatcagatattacagtattcatggttctttgactgacatggaatctgctt 664

                                                                
Query: 650 gtaatcgccttaaaaggtctagacatcttatagacagagaaggaatcagagca 702
            || ||||||||||||||||||||||||  |||||||||||||||||||||||
Sbjct: 665 atagtcgccttaaaaggtctagacatctcgtagacagagaaggaatcagagca 717