Jatropha Genome Database

JcCB0100521.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0100521.10 - phase: 0 /partial
         (321 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29646.m001073 nucleic acid binding protein, putative                  337   2e-92

>29646.m001073 nucleic acid binding protein, putative
          Length = 1563

 Score =  337 bits (170), Expect = 2e-92
 Identities = 275/310 (88%)
 Strand = Plus / Plus

                                                                        
Query: 8    ctcagcaagacaatatgcaatggggccataggcaaattgagcctgagaatacctcagtca 67
            ||||||||||||||||||||||||| ||||||| | | |||||||| || | |||||| |
Sbjct: 1247 ctcagcaagacaatatgcaatggggtcataggcgagtggagcctgaaaacagctcagtta 1306

                                                                        
Query: 68   ctgcagggctgggacttggtttaccttgtgatggaggttctgggttaaaggaattgatga 127
            |||| ||||| |||||||| |||||||||||||||||||| || ||||||||||||||||
Sbjct: 1307 ctgctgggctaggacttggattaccttgtgatggaggttcaggattaaaggaattgatga 1366

                                                                        
Query: 128  tgggaactccctctgtttttggtcctaagcaaacaacccttgatttccttggattgggta 187
            ||| |||||| ||||||||||||||||||||||| ||||||||||| ||||||||||| |
Sbjct: 1367 tggcaactccttctgtttttggtcctaagcaaactacccttgattttcttggattgggaa 1426

                                                                        
Query: 188  tggctgctggtggaagccctagtagtggtttgtcagctctaattacttctattggtagtg 247
            |||||||||||||| |  ||||  ||||  |||||||||||||||| |||||||||||||
Sbjct: 1427 tggctgctggtggaggttctagcggtggcctgtcagctctaattacgtctattggtagtg 1486

                                                                        
Query: 248  gcatggatgtggctgccgcagcagcttcttttggaggcggagaatattctggcaaagacc 307
            |  | ||||| ||||| |||||||| ||||||||||||||||||| |||||| |||||| 
Sbjct: 1487 gtctagatgtagctgctgcagcagcctcttttggaggcggagaattttctggaaaagaca 1546

                      
Query: 308  tgggaaggag 317
            ||||||||||
Sbjct: 1547 tgggaaggag 1556