Jatropha Genome Database

JcCB0100471.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0100471.10 + phase: 2 /pseudo/partial
         (217 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29842.m003531 homeobox protein knotted-1, putative                    204   2e-52
30170.m013647 homeobox protein knotted-1, putative                     80   6e-15
29631.m001056 homeobox protein knotted-1, putative                     58   2e-08

>29842.m003531 homeobox protein knotted-1, putative
          Length = 1062

 Score =  204 bits (103), Expect = 2e-52
 Identities = 169/191 (88%)
 Strand = Plus / Plus

                                                                        
Query: 17   gagtcacagaagctggccctagcagaatccacaggcctggaccagaagcaaattaacaat 76
            |||||||||||||||||||| |||||||| || ||  |||| ||||||||||| || || 
Sbjct: 859  gagtcacagaagctggcccttgcagaatctactggtttggatcagaagcaaataaataac 918

                                                                        
Query: 77   tggttcattaaccagaggaaacggcactggaaaccatcggaggatatgcagttcgtagtg 136
            |||||||||||||| || |||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 919  tggttcattaaccaaagaaaacggcattggaaaccatcggaggatatgcagttcgtggtg 978

                                                                        
Query: 137  atggatgctacgcatcctcattattacgtggataacgttcttggtaaccctttcccgatg 196
            ||||||||||| |||||||| |||||  ||||||| |||||||| || |||||||| |||
Sbjct: 979  atggatgctacccatcctcactattatatggataatgttcttggaaatcctttcccaatg 1038

                       
Query: 197  gacatctctcc 207
            || ||||||||
Sbjct: 1039 gatatctctcc 1049


>30170.m013647 homeobox protein knotted-1, putative
          Length = 780

 Score = 79.8 bits (40), Expect = 6e-15
 Identities = 100/120 (83%)
 Strand = Plus / Plus

                                                                       
Query: 24  agaagctggccctagcagaatccacaggcctggaccagaagcaaattaacaattggttca 83
           ||||| |||| || |||||||| || ||  |||||||||| ||||| || ||||||||||
Sbjct: 584 agaaggtggcactggcagaatcaactggtttggaccagaaacaaataaataattggttca 643

                                                                       
Query: 84  ttaaccagaggaaacggcactggaaaccatcggaggatatgcagttcgtagtgatggatg 143
           | || ||||||||||| || |||||||| ||||| || ||||| ||| | ||||||||||
Sbjct: 644 taaatcagaggaaacgacattggaaaccctcggaagacatgcaattcatggtgatggatg 703


>29631.m001056 homeobox protein knotted-1, putative
          Length = 1014

 Score = 58.0 bits (29), Expect = 2e-08
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                
Query: 59  cagaagcaaattaacaattggttcattaaccagaggaaacggcactggaaacc 111
           |||||||||||||||||||||||||| || || || || || |||||||||||
Sbjct: 898 cagaagcaaattaacaattggttcataaatcaaagaaagcgtcactggaaacc 950