Jatropha Genome Database
- JcCB0100231.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0100231.10 - phase: 1 /partial
(1469 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
30226.m001997 DNA binding protein, putative 426 e-118
>30226.m001997 DNA binding protein, putative
Length = 1926
Score = 426 bits (215), Expect = e-118
Identities = 803/1000 (80%), Gaps = 23/1000 (2%)
Strand = Plus / Plus
Query: 488 ccaggaaactgaggtgtataagaacctggtcaggcaacacctggatttggaaacaataca 547
||||||||| || |||||||| ||| || ||||||| || ||||||||||||||||||||
Sbjct: 921 ccaggaaacagacgtgtataaaaacatgatcaggcagcatctggatttggaaacaataca 980
Query: 548 aacaaggctggaacaaggatcctacgcttcttcaaatctctcattctatcgagatctttt 607
|| | ||||||||||||||||||| ||||||||||||||| || |||||||||||| ||
Sbjct: 981 gacgaagctggaacaaggatcctactcttcttcaaatctcttatgctatcgagatctctt 1040
Query: 608 gcttctcttcaacaatgctattgtgttctttcccaaaacctctaatgaatcacatgcagc 667
|||||||||||| |||||||| || ||||| ||||| |||| |||||||| ||||||
Sbjct: 1041 gcttctcttcaataatgctatagttttcttctccaaatcctccaatgaatctactgcagc 1100
Query: 668 ttatgaactccgatcgcttgtcaccaatgaaatgaaaaaagagactcagaaatctgattc 727
||||||||| |||| | ||| | ||| ||||||| ||||||| ||| ||| |||| |
Sbjct: 1101 ctatgaactcagatcagtcgtctcaaatcaaatgaagaaagagattcaaaaacctgagtt 1160
Query: 728 tacggttgcaccactggatattccacctcagcccaaaagtgaaccggaaagatcagactc 787
||| | | || | || |||||||||||||| |||||||||| | ||| ||||||||
Sbjct: 1161 tactgcagtgcctcaagagattccacctcagccaaaaagtgaactgcaaaagtcagactc 1220
Query: 788 attgctcgctaagcacaaggcttcggctcctattgtagtctgtcgcaaacgaagttcatt 847
||| || ||||||||||||||||| ||||| ||||||||||| ||||| || ||||||||
Sbjct: 1221 attacttgctaagcacaaggcttcagctcccattgtagtctgccgcaagcggagttcatt 1280
Query: 848 gtctgctaagccttcccctttgagctttgtacaaaagatcg------------------a 889
| | ||||| |||||||||| ||||||| ||||||| | |
Sbjct: 1281 gacagctaaaccttccccttctagctttggccaaaagactgaacagcagcagccgcaaca 1340
Query: 890 gcaccagcagcaaagcagtgacaatgaaccggttagcgatttaaagccactcgctgttga 949
||| || ||||||| || |||||||||||| ||| |||| |||||||| | ||||||
Sbjct: 1341 gcaacaacagcaaatcaatgacaatgaaccacctagtgattcaaagccacctgttgttga 1400
Query: 950 acagagttcactgaagatagaatcgaaagagaagcctgtaactggcacgagaagctcaag 1009
|||||||| | | ||||||||| | |||||||||||||| |||||||| || ||||| ||
Sbjct: 1401 acagagtttattaaagatagaagcaaaagagaagcctgttactggcaccaggagctctag 1460
Query: 1010 aagaagcaacaagaatctcgtgaaaagtactaacaccccaagcaagaagccaaatgtatc 1069
|||||||||||||||||| | ||| |||| | |||||||||||||||| |||||
Sbjct: 1461 aagaagcaacaagaatcttgcaaaaggtacaactaccccaagcaagaagcaaaatgcgag 1520
Query: 1070 ccctgtcacaaaagttagtacagctgataagcctgaaactcctaaaattgataagaagaa 1129
|||| |||||| ||| |||| ||| | ||||||||||||||||| ||| ||||||||
Sbjct: 1521 ccctaccacaaaggttgacacagttgacaggcctgaaactcctaaaactgagaagaagaa 1580
Query: 1130 agctgaaccatcatcattggataagaaacgaagtgccgtagatttcttgaagagaataaa 1189
| ||||| | |||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 1581 aactgaagtgttggcattggataagaaacgaagtgcagcagatttcttgaagagaataaa 1640
Query: 1190 gaaaaattctccggtggaggtatcaaagaaaaatactagaggagctgctaatggtg--ct 1247
||||||||| || |||||| |||||||||||||||| ||| || |||||| | |
Sbjct: 1641 gaaaaattcccctgtggagacggcaaagaaaaatactaggggaagtgttaatggcggcat 1700
Query: 1248 ggagagcgaaaaagg--gatagtcccgggaagggagagaaagggaaagaaagagtctcga 1305
||| | |||||||| ||| | ||||||| || ||||||||||||||||||||
Sbjct: 1701 gga-atggaaaaaggataataataccgggaaaggggagaaagggaaagaaagagtactac 1759
Query: 1306 ggagaaatggtgatgataaacaaatggaggagagtagtccttcgaagaaaaatcttggga 1365
| | |||||||||||| |||||| ||||||||||||| || || || | |||| ||||||
Sbjct: 1760 gaaaaaatggtgatgaaaaacaagtggaggagagtagcccatcaaaaagaaatgttggga 1819
Query: 1366 ggccaacaaagaagggggcagaggcaagtaaggtttctggaaagcatgggagggacagtg 1425
||||| |||||||| | | ||||| || |||||||| || || | ||||||||| | ||
Sbjct: 1820 ggccatcaaagaagagtgtagaggtgagcaaggtttcagggaaacgtgggagggaaaatg 1879
Query: 1426 gaggaaaggaggtagcgaagcggccaaagaagcggtctag 1465
|||||||||| ||| || |||||||| |||||||||||
Sbjct: 1880 ttggaaaggaggcagcaaaacggccaaaaaagcggtctag 1919
Score = 83.8 bits (42), Expect = 3e-15
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 266 ggaatcgcacgagttgggtgactcggcgactcaactgagtagtgaggtacagagctcggc 325
||||||||| ||||||| |||||||| |||||| ||||||||||||| |||||||||||
Sbjct: 690 ggaatcgcatgagttggctgactcggtgactcagttgagtagtgaggttcagagctcggc 749
Query: 326 gagttt 331
||||||
Sbjct: 750 gagttt 755