Jatropha Genome Database
- JcCB0096461.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0096461.10 - phase: 2 /partial
(1027 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29801.m003176 DNA binding protein, putative 317 7e-86
30170.m013868 DNA binding protein, putative 56 4e-07
30226.m002055 DNA binding protein, putative 52 7e-06
>29801.m003176 DNA binding protein, putative
Length = 1302
Score = 317 bits (160), Expect = 7e-86
Identities = 339/398 (85%), Gaps = 3/398 (0%)
Strand = Plus / Plus
Query: 557 cagcttgctagtccaggaatcaggagttcagttgctggtattgcagatacaaatataaag 616
|||||||| || |||||| ||| |||||| || ||| ||||||||| || | ||||
Sbjct: 802 cagcttgccagcccaggagcgaggggttcagctgttgggattgcagatccatctttaaac 861
Query: 617 aataatttagttcatggtggtggaatgagaatggttggtttaggaactgcaggtgttccg 676
||||||||||||||||| || ||||| | || ||||||||||||||| | ||||
Sbjct: 862 aataatttagttcatggaggaggaattggcattgttggtttaggaactagggatgttaaa 921
Query: 677 gttgcaacaggatctcctgcaaaccacatatcaccagatatgatcacaaaaggtaacgca 736
|||||||||||||||||||| ||||| ||||||||||||||||| ||||| || ||
Sbjct: 922 gttgcaacaggatctcctgctaaccagatatcaccagatatgatggcaaaaagtggtaca 981
Query: 737 gatacgccttcttcactatcaccagttccaaacacatttggacggggaagaaaagcaagt 796
|||||||||| |||||||||||||| |||| ||||| |||||||||||||| |||
Sbjct: 982 gatacgcctttg---ctatcaccagttcctaacatgtttggccggggaagaaaagccagt 1038
Query: 797 gctgctttggacaaagtaattgagagaaggcaccggagaatgattaaaaatagagagtca 856
|| |||||||| || |||||||||||||| |||||||| |||||||||||| ||||||||
Sbjct: 1039 gcagctttggaaaaggtaattgagagaagacaccggaggatgattaaaaatcgagagtca 1098
Query: 857 gccgcaaggtcacgggctcgcaagcaggcctacacactggaactagaagcagaagttgca 916
|| ||||||||||| ||||| ||||||||||| ||| |||| ||||||||||||||||||
Sbjct: 1099 gcagcaaggtcacgagctcggaagcaggcctatacattggagctagaagcagaagttgca 1158
Query: 917 aaacttaaagaaatgaatcaggaattgcagagaaagca 954
|||||||||||||||||||| |||||||||||||||||
Sbjct: 1159 aaacttaaagaaatgaatcaagaattgcagagaaagca 1196
Score = 159 bits (80), Expect = 4e-38
Identities = 116/128 (90%)
Strand = Plus / Plus
Query: 56 aggcaacagactttaggagaaatgactttggaggagttcttggccagagcaggagttgta 115
||||||||||||||||| || ||||||||||||||||||||||||| ||||| || ||
Sbjct: 406 aggcaacagactttaggtgagatgactttggaggagttcttggccaaggcaggggtagtg 465
Query: 116 agggaggatactcagctaattggaaggtcaaataatggtggattctttgatgaattatca 175
|| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 466 agagaggatactcagctaataggaagaccaaataatggtggattctttgatgaattatca 525
Query: 176 cgactaaa 183
|||||||
Sbjct: 526 agactaaa 533
Score = 75.8 bits (38), Expect = 5e-13
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 954 agttcttagagtcgatgaatcggcaatggggatcgaaaaggcaatgcttgcggaggacat 1013
|||| |||||| |||| |||||||| ||||||||||| |||| |||||||| |||||||
Sbjct: 1226 agtttttagagacgataaatcggcagtggggatcgaagaggccatgcttgcagaggacac 1285
Query: 1014 tgacaggcccttgg 1027
||||||| ||||||
Sbjct: 1286 tgacaggtccttgg 1299
>30170.m013868 DNA binding protein, putative
Length = 1269
Score = 56.0 bits (28), Expect = 4e-07
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 851 gagtcagccgcaaggtcacgggctcgcaagcaggcctacacactggaactagaagcagaa 910
||||| || ||||| |||||||||||||||||||| || || |||| | |||||||||
Sbjct: 1063 gagtcggctgcaagatcacgggctcgcaagcaggcttatactatggagttggaagcagaa 1122
Query: 911 gttgcaaa 918
||||||||
Sbjct: 1123 gttgcaaa 1130
>30226.m002055 DNA binding protein, putative
Length = 933
Score = 52.0 bits (26), Expect = 7e-06
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 65 actttaggagaaatgactttggaggagttcttggccagagcaggagttgt 114
||||| ||||| |||||||||||||| ||||||| | ||||||||||||
Sbjct: 376 actttgggagagatgactttggaggatttcttggttaaagcaggagttgt 425