Jatropha Genome Database
- JcCB0096311.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0096311.10 + phase: 0
(906 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29648.m001963 DNA binding protein, putative 379 e-104
>29648.m001963 DNA binding protein, putative
Length = 1533
Score = 379 bits (191), Expect = e-104
Identities = 368/427 (86%)
Strand = Plus / Plus
Query: 395 tctgtaaaatatgtggaagtgaggtggaaaatggtgaaaaggtgaagatatgtgagcaca 454
||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1058 tctgtaagatgtgtggaagtgaggtggaaaatggtgaaaaggtgaagatatgtgagcata 1117
Query: 455 atggatgcccttacaagtattaccatgtgaggtgcctgaccactaaccttttaaaatcct 514
| || |||||||||||||||||||| ||||||||||| | |||||| |||||||| |
Sbjct: 1118 ttttgtgtccttacaagtattaccatgtaaggtgcctgacaaataacctgttaaaatctt 1177
Query: 515 atggtcctcgttggtattgctcttcttgtctatgtagagtttgccttcttgatagagatg 574
|||||||||| ||||||||| ||||||| ||||||||| |||| | ||||||||||||
Sbjct: 1178 atggtcctcggtggtattgcccttcttgcctatgtagaacttgcttcgttgatagagatg 1237
Query: 575 atcatcagattgttttatgtgatggttgtgatcatgcatttcacctgtattgtttgaatc 634
|| |||||||||||||||||||||||||||| ||||||| |||| ||||||| ||| ||
Sbjct: 1238 atgatcagattgttttatgtgatggttgtgaccatgcatatcacatgtattgcatgagtc 1297
Query: 635 caccacgcacttctgtgccaagagggaagtggttctgcagacaatgtgatgtgaaaatca 694
| || |||||||| | || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1298 cgccgcgcacttccataccgagagggaagtggttctgcagacaatgtgatgtgaaaatca 1357
Query: 695 aggaaatacgcagggtaaagaaggcatatgagaaacaaggaaatagaatgaaaaggaaag 754
| ||||||||||| | ||||| |||||||||||||| || ||| ||| || ||| |||||
Sbjct: 1358 aagaaatacgcagagcaaagagggcatatgagaaacgagaaaaaagattggaaaagaaag 1417
Query: 755 acgaaatgggcagaagtgcatgtgagaatcttgggaagaaactggatgtgaactgtgatc 814
||| | | ||| |||||||||||||||| ||||||| |||||| ||| |||||
Sbjct: 1418 ctgaagcagataaaagagcatgtgagaatcttgagaagaaattggatgagaaatgtgaaa 1477
Query: 815 aggaatc 821
|||||||
Sbjct: 1478 aggaatc 1484
Score = 240 bits (121), Expect = 1e-62
Identities = 187/209 (89%)
Strand = Plus / Plus
Query: 53 tctgcacatgccggcattgtgggggcaaagcagatgggagggattgtttagtatgtgatt 112
||||||| ||| ||| |||||| |||||||||||||||||| |||||||||||||||| |
Sbjct: 719 tctgcacttgcaggcgttgtggaggcaaagcagatgggaggaattgtttagtatgtgact 778
Query: 113 catgtgaggaaatgtaccatgtatcctgtattcaacctgctgtcaaagagattccactaa 172
|||| ||||||||||||||||||||||||||| |||||| |||||||||||||| |
Sbjct: 779 catgcgaggaaatgtaccatgtatcctgtattgaacctgtcgtcaaagagattccctcca 838
Query: 173 aaagttggtactgtgcaagctgcactgcagtaggaatgggatctcctcatgagaattgtg 232
|||||||||||||||| |||||| |||||| ||| |||||||||||||||||||||||||
Sbjct: 839 aaagttggtactgtgctagctgctctgcagcagggatgggatctcctcatgagaattgtg 898
Query: 233 tggtgtgcaagaggctgaatgcccccagg 261
||||| ||||||||||||||||||||
Sbjct: 899 cagtgtgtgagaggctgaatgcccccagg 927