Jatropha Genome Database
- JcCB0095251.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0095251.10 - phase: 2 /partial
(2005 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
30128.m008874 Eukaryotic translation initiation factor 3 subunit... 751 0.0
>30128.m008874 Eukaryotic translation initiation factor 3 subunit,
putative
Length = 2985
Score = 751 bits (379), Expect = 0.0
Identities = 625/707 (88%)
Strand = Plus / Plus
Query: 809 gctgagattgagcaacgaaagaaccaaaggatcctccaggaaatagagcagcgagaactt 868
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1828 gctgagattgagcagaggaagaaccaaaggatcctccaggaaatagagcagcgagaactt 1887
Query: 869 gaagaagcacaggctttgcttgaggatgttgacaagcgaagtaaaaggaaggggggaaaa 928
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1888 gaagaagcacaggctttgctcgaggatgttgacaagcgaagtaaaaggaaggggggaaag 1947
Query: 929 aagccgatcttagaaggagagaaagtgacgaaacaaactataatggaaagggctttgagc 988
||||| ||| | |||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 1948 aagccaatcctggaaggagagaaagtgacgaagcagactataatggaaagggctttgagt 2007
Query: 989 gagcagctcagggagaggcaggaaatggagaagaaattacaaaaactagctaaaacgatg 1048
||||| || |||||||||||||| ||||| ||||| |||||||||| ||||| || |||
Sbjct: 2008 gagcaactaagggagaggcaggagatggaaaagaagctacaaaaactggctaagacaatg 2067
Query: 1049 gattatttggaaagagcaaagagagaggaggcagcaccattgattgaggctgctttccaa 1108
|||||||||||||| || |||||||| |||||||| ||||||||||| |||||||| |||
Sbjct: 2068 gattatttggaaagggctaagagagaagaggcagctccattgattgaagctgcttttcaa 2127
Query: 1109 cgacgcctggtggaagagaaggctcttaatgaacatgagcagcagctagagattgaactt 1168
||||| ||||||||||||||| ||| ||||| |||||||||||||||| ||||||
Sbjct: 2128 cgacggttggtggaagagaaggtccttcatgaaagcgagcagcagctagagactgaacta 2187
Query: 1169 agcaggcagcgccatgacggtgacctcagggagaagaataggttgtctcggatgctggaa 1228
||||| ||||| ||||| || |||||||||||||||||||| ||||| ||||||||||
Sbjct: 2188 agcagacagcgtcatgatggggacctcagggagaagaatagactgtctaggatgctggac 2247
Query: 1229 aacaaaatgatattccaggaaagagtaatgagccgccgacaagctgagtttgaccggctg 1288
|| || || || |||||||||||||| ||||| || ||||||||||| ||||| |||||
Sbjct: 2248 aataagataattttccaggaaagagtgatgagtcgtcgacaagctgaatttgatcggctt 2307
Query: 1289 agaacagagagagaagaaagaatcaatcaaattattcaggcccgaaaacaagaaagggaa 1348
||| ||| ||||||||||||||||| || || |||||||| ||||| ||||| |||||
Sbjct: 2308 agagtagaaagagaagaaagaatcaaccagatcattcaggctcgaaagcaagagagggag 2367
Query: 1349 gctaataggaagaaaatattctatgtgaggactgaagaggaaaggctgaggaagttgcgt 1408
||||| |||||||| || |||||||||||| |||||||||| || ||||| ||| ||| |
Sbjct: 2368 gctaagaggaagaagattttctatgtgaggtctgaagaggagagactgagaaagctgcat 2427
Query: 1409 gaagaggaggaagctcgcaagcgagaagaggctgagagacgacggaaagaagaagctgaa 1468
|||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||
Sbjct: 2428 gaagaggaggaagctcgcaaacatgaagaggctgagagacgaaggaaagaagaagctgaa 2487
Query: 1469 cgcaaggcaaagctggatgagattgctgcaaagcagagacagagaga 1515
|||||||||||| ||||||| ||||||| |||||||| ||||||||
Sbjct: 2488 cgcaaggcaaagttggatgaaattgctgagaagcagaggcagagaga 2534
Score = 573 bits (289), Expect = e-162
Identities = 626/737 (84%), Gaps = 1/737 (0%)
Strand = Plus / Plus
Query: 4 ctggaacttgaaaatgaaaaagagcgcaacttgcagaatggctaatctcattggattcaa 63
|||||||||||||||||||| || ||| |||| || ||||| ||||| ||||| |||||
Sbjct: 1024 ctggaacttgaaaatgaaaaggaacgcgtcttg-aggatggccaatcttattgggttcaa 1082
Query: 64 tctagaccctaaacctgagagtagagaagcgctttcaaggccatcccttctgtcagaact 123
||||||||| ||||||||||||||||||| | | |||||| || |||| || | || ||
Sbjct: 1083 tctagacccaaaacctgagagtagagaagtgttgtcaaggtcagccctccttactgagct 1142
Query: 124 gatttccaagggggtattgagctgtgctacacaggaagtgaaagatctttatcatcttct 183
| | ||||| ||||| |||||||| || || |||||||||||||||||||| ||| || |
Sbjct: 1143 ggtatccaaaggggttttgagctgcgcaacgcaggaagtgaaagatctttaccatttttt 1202
Query: 184 ggagaatgagtttctccccctagatcttgcagcaaaggtacagccactgttatccaagat 243
|||| |||| ||||| || || ||||||||||||||| ||||||| || || |||| ||
Sbjct: 1203 ggagcatgaatttcttccactggatcttgcagcaaagatacagccgctattgaccaaaat 1262
Query: 244 ctcaaaacttgggggaaaaattgcttcagcttcttctgtgccagaagtgcaactgtctca 303
|| | | |||| || ||| ||||||||||||| ||||||||||||| ||| |||||||
Sbjct: 1263 ttctagatttggtgggaaacttgcttcagcttcctctgtgccagaagcacaattgtctca 1322
Query: 304 atatgttcctgcccttgaaaagcttgctactttaaggctgcttcagcaggtgtcacaggt 363
|||||||||||| ||||||||||||||||| |||||| |||| || |||||||| |||||
Sbjct: 1323 atatgttcctgctcttgaaaagcttgctaccttaaggttgctccaacaggtgtctcaggt 1382
Query: 364 gtatcagatgatgaaaattgagagtttatctcagatgatcccctttcttgacttttctgt 423
|||||| | ||||||||| || ||||| |||||||||||||||||| |||| ||| ||||
Sbjct: 1383 gtatcaaacgatgaaaatcgaaagtttgtctcagatgatccccttttttgattttcctgt 1442
Query: 424 tgtcgagaaaatttctgttgatgctgtgaaacataatttcttagctatgaaagttgaaca 483
||| ||||| ||||||||||||||||| |||||| ||||| |||| |||||| |||| ||
Sbjct: 1443 tgtggagaagatttctgttgatgctgttaaacatgatttcatagcgatgaaaattgacca 1502
Query: 484 tacaaagggcgtcatattgtttaataatttgggtcttgaatctgatggactgcgagacca 543
| ||| |||||||| ||| |||||||| ||||||||| |||| ||||||||| ||
Sbjct: 1503 tgtgaagaatgtcatattatttggtaatttggatcttgaatcggatgaactgcgagatca 1562
Query: 544 tcttgcaatttttgcggaatccttaaataaagtgagggccttgatatatcctccagcaaa 603
|||||||| |||||| | |||||||| || | ||| || |||||||||||||| |||
Sbjct: 1563 tcttgcaaattttgctgtctccttaaacaaggcaaggaccatgatatatcctccaataaa 1622
Query: 604 gaaatcttcaaaactaggtgagattttacctggattgggggagattgtggataaggaaca 663
|||||| |||||| ||||||| |||||||||||| | ||||||||||||||||| |||||
Sbjct: 1623 gaaatcatcaaaagtaggtgatattttacctggactaggggagattgtggataaagaaca 1682
Query: 664 taaaagactgcttgctcggaaatcaattattgaaaagaggaaggaagaacaagaacgtca 723
|| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 1683 caagagactacttgctcggaaatcaattattgaaaagcggaaggaagaacaagaacgcca 1742
Query: 724 acttttggaaatggaac 740
|||||||||| ||||||
Sbjct: 1743 acttttggaattggaac 1759
Score = 85.7 bits (43), Expect = 1e-15
Identities = 58/63 (92%)
Strand = Plus / Plus
Query: 1900 ctctgatcgatggggcagtggtccaagacctgaggatcgcaacccacctggtgataggtg 1959
||||||||| ||||||||| || |||||||||| ||||| ||||||||||||||||||||
Sbjct: 2877 ctctgatcgctggggcagtagtacaagacctgatgatcgtaacccacctggtgataggtg 2936
Query: 1960 gcg 1962
|||
Sbjct: 2937 gcg 2939