Jatropha Genome Database

JcCB0089711.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0089711.10 + phase: 0 
         (210 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30147.m014494 sec61 gamma subunit, putative                           278   1e-74
30190.m010919 sec61 gamma subunit, putative                            90   6e-18

>30147.m014494 sec61 gamma subunit, putative
          Length = 210

 Score =  278 bits (140), Expect = 1e-74
 Identities = 188/204 (92%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggatgccttggactccgtcttcgatcctctcagagagttcgccaaggacagtgtacgc 60
           ||||||||||| ||   ||| || |||||||||||||| ||||||||||||||||| |||
Sbjct: 1   atggatgccttagataacgtgtttgatcctctcagagatttcgccaaggacagtgtccgc 60

                                                                       
Query: 61  cttgttaagaggtgccacaagcctgatcgcaaagaattcacgaaggtcgcgttccgtact 120
           || ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 61  ctcgttaagaggtgccacaaacccgatcgcaaagaattcacgaaggtcgcgttccgtact 120

                                                                       
Query: 121 gcaattggtttcgtggtgatgggattcgtcggattcttcgtgaagttgatcttcattccg 180
           ||||| ||||||||||||||||||||||||||||||||||||||| ||||||| || |||
Sbjct: 121 gcaatcggtttcgtggtgatgggattcgtcggattcttcgtgaagctgatctttatcccg 180

                                   
Query: 181 atcaacaacattatcgtcggttct 204
           ||||||||||| ||||||||||||
Sbjct: 181 atcaacaacatcatcgtcggttct 204


>30190.m010919 sec61 gamma subunit, putative
          Length = 210

 Score = 89.7 bits (45), Expect = 6e-18
 Identities = 120/145 (82%)
 Strand = Plus / Plus

                                                                       
Query: 44  ccaaggacagtgtacgccttgttaagaggtgccacaagcctgatcgcaaagaattcacga 103
           |||||||||| || ||||| || ||| | || |||||||| ||||||||||| |||||||
Sbjct: 44  ccaaggacagcgtccgcctcgtcaagcgttgtcacaagcccgatcgcaaagagttcacga 103

                                                                       
Query: 104 aggtcgcgttccgtactgcaattggtttcgtggtgatgggattcgtcggattcttcgtga 163
           |||| || |||||||| || || || || || |||||||||||||| || ||||| || |
Sbjct: 104 aggtggctttccgtacagcgataggatttgtagtgatgggattcgttggtttctttgtca 163

                                    
Query: 164 agttgatcttcattccgatcaacaa 188
           | ||||| |||||||| || |||||
Sbjct: 164 aattgatattcattcctattaacaa 188