Jatropha Genome Database
- JcCB0086771.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0086771.10 - phase: 1 /pseudo/partial
(1247 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29842.m003633 homeobox protein, putative 668 0.0
29600.m000538 homeobox protein, putative 182 3e-45
30171.m000424 Homeobox protein GLABRA2, putative 52 8e-06
>29842.m003633 homeobox protein, putative
Length = 2184
Score = 668 bits (337), Expect = 0.0
Identities = 556/629 (88%)
Strand = Plus / Plus
Query: 600 actgcacacgcatggacaacattatctgcaacaggttctgatgatgttagggtcatgaca 659
||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 1537 actgcacacgcgtggacaacgttatctgcaacaggttctgatgatgtaagggtcatgact 1596
Query: 660 agaaagagtatggacgatcctggcaggcctcctggtattgtacttagcgcagcaacttct 719
|||||||||||||| ||||| |||||||||||||||||||| ||| |||| |||||||||
Sbjct: 1597 agaaagagtatggatgatccaggcaggcctcctggtattgtgctttgcgctgcaacttct 1656
Query: 720 ttctggattccagttcctcctaagaaagtatttgagttcctaagtgatgagaatcatcga 779
|||||| ||||||||||||| |||| ||||||| ||||||||||||||||||| ||||||
Sbjct: 1657 ttctggcttccagttcctccgaagagagtatttcagttcctaagtgatgagaaccatcga 1716
Query: 780 agcgagtgggatatcctttcaaatggtggccaagttcaagaaatggctcacattgctaat 839
|| |||||||||||||||||||| ||||| ||||| | |||||||||||||||||||||
Sbjct: 1717 agtgagtgggatatcctttcaaacggtggtcaagtcgaggaaatggctcacattgctaat 1776
Query: 840 ggacgcgatccaggaaactatgtttctttgctccgtgtgaatagtgcaaattcaagccaa 899
|| |||||||| ||||||| ||| ||||| |||||||| | ||||||||||||||| |||
Sbjct: 1777 gggcgcgatccgggaaactgtgtatctttactccgtgtcattagtgcaaattcaagtcaa 1836
Query: 900 agcaacatgctgatactacaagagagctgcacagactctactggatcgtatgtcatatat 959
||||||||||||| |||||||||||||||||| ||||| ||||| || ||||| || |||
Sbjct: 1837 agcaacatgctgacactacaagagagctgcaccgactccactggctcatatgttatctat 1896
Query: 960 gcaccagtagacattgcagcaatgaatatagtgctgagtggaggagacccagattatgta 1019
|||||||| || ||||| || ||||||||||| ||||| || || || |||||||||||
Sbjct: 1897 gcaccagtggatattgctgccatgaatatagtcctgagcggtggggatccagattatgtt 1956
Query: 1020 gctctccttccatcaggttttgctatacttcctgatggacctgaatataacccaggaggg 1079
||||| ||||| ||||||||||||||||||||||||||||||| || | ||| |||
Sbjct: 1957 gctctacttccttcaggttttgctatacttcctgatggacctggattcagccctggaata 2016
Query: 1080 agtcttgatgttggttctggtggtgctttacttactgttgcatttcaaatattagttgat 1139
| |||||||||||| || || |||||| | | ||||||||||||||||| | || |||
Sbjct: 2017 attcttgatgttgggtccggcggtgctcttgtcactgttgcatttcaaatcctggtggat 2076
Query: 1140 tcagttccaactgcaaaactctctcttggatcagtagcaacagtaaacaatctaattaag 1199
||| ||||||||||||||||||||||||||||||| || ||||| |||||||||||||||
Sbjct: 2077 tcaattccaactgcaaaactctctcttggatcagtggcgacagtgaacaatctaattaag 2136
Query: 1200 tgcacagttgaaaggatcaaggctgcagt 1228
|||||||||||||||||||| || |||||
Sbjct: 2137 tgcacagttgaaaggatcaaagcagcagt 2165
Score = 492 bits (248), Expect = e-138
Identities = 503/588 (85%)
Strand = Plus / Plus
Query: 5 agagcttttccaaggggaattgggccaaggcctttgggattaagatcagaagcttcaagg 64
|||||||| || || |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 856 agagctttccctagaggaattgggccaaggcctttgggattaagatcggaagcttcaagg 915
Query: 65 gattctgcagtcattattatgaatcatataaatcttgttgagattctaatggatgtgaat 124
|| || ||||| |||| ||||||||| | |||||||| |||||||||||||||||||||
Sbjct: 916 gaatcagcagttgttatcatgaatcatgttaatcttgtcgagattctaatggatgtgaat 975
Query: 125 caatggtctactatgttttgtggtattgtatccagagggatgaccttggaaatactttca 184
|| ||||||||| |||| ||| |||||||||| |||| ||||| | ||||| || ||
Sbjct: 976 cagtggtctactgtgttctgtagtattgtatcaagagcaatgactctagaaatcctatcg 1035
Query: 185 actggtgtagctgggaactataatggagccttgcaagtgatgacagctgagtttcaagtc 244
|| || || ||||||||||| ||||||||||| |||||||||||||| || || ||||||
Sbjct: 1036 acaggagtggctgggaactacaatggagccttacaagtgatgacagcagaattccaagtc 1095
Query: 245 ccttcaccacttgttccaactcgagaaaattactttgttaggtactgtaaacaacatgtt 304
||||||||| | |||||||| || |||||||||||||| ||||||||||| || |||||
Sbjct: 1096 ccttcaccattggttccaacccgtgaaaattactttgtgaggtactgtaagcagcatgta 1155
Query: 305 gatgggacatgggcagtggttgatgtttcattggacaatttgcgccctattccaatatcc 364
||||| || |||||||||||||||||||| || |||||||| || |||| ||||||| |
Sbjct: 1156 gatggaacttgggcagtggttgatgtttccttagacaatttacggcctagtccaatagca 1215
Query: 365 aggagtagaagaagaccttcgggttgtgtaatccaagaattgccaaatggttactcaaag 424
|||||||||||||| | || |||||||| || ||||| |||||||||||||||||||||
Sbjct: 1216 aggagtagaagaaggctatcaggttgtgtgattcaagacttgccaaatggttactcaaag 1275
Query: 425 gtgatatgggttgagcacattgaagtagatgatagatcccttcacagtgtatataagcca 484
|||| |||| | |||||||| ||||| ||||||||||| | |||||| |||| | ||||
Sbjct: 1276 gtgacatggatagagcacatcgaagtggatgatagatctgtccacagtttatacaggcca 1335
Query: 485 ctagttagttctggtgttgcgtttggagcaaaacgatgggttgctaccttagatcgacaa 544
||| ||| ||| ||| | || || || |||||||| ||||| |||| |||||||||||||
Sbjct: 1336 ctaattaattcgggtttagctttcggtgcaaaacgttgggtggctatcttagatcgacaa 1395
Query: 545 tgtgaacgtctagcaagttcaatggccataaacattccagcaggagat 592
|| |||||||| |||||||| ||||| || || |||||||||||||||
Sbjct: 1396 tgcgaacgtctggcaagttccatggcgatcaatattccagcaggagat 1443
>29600.m000538 homeobox protein, putative
Length = 2196
Score = 182 bits (92), Expect = 3e-45
Identities = 230/276 (83%)
Strand = Plus / Plus
Query: 78 ttattatgaatcatataaatcttgttgagattctaatggatgtgaatcaatggtctacta 137
|||| |||||||| || || ||||||||| ||| ||||||||||| |||||||| |||
Sbjct: 935 ttatcatgaatcacatcaaccttgttgagtatctcatggatgtgaaccaatggtcgactg 994
Query: 138 tgttttgtggtattgtatccagagggatgaccttggaaatactttcaactggtgtagctg 197
|||||| || ||||| || |||| |||||| ||||| || | ||||| || ||||| |
Sbjct: 995 tgttttccgggattgtctcaagagcgatgacactggaagtattatcaacaggagtagcag 1054
Query: 198 ggaactataatggagccttgcaagtgatgacagctgagtttcaagtcccttcaccacttg 257
||||||| ||||||||| ||||||||||||| ||||| || ||| | ||| | |||||||
Sbjct: 1055 ggaactacaatggagccctgcaagtgatgacggctgaattccaacttcctactccacttg 1114
Query: 258 ttccaactcgagaaaattactttgttaggtactgtaaacaacatgttgatgggacatggg 317
|||||||| | || | ||||||||| ||||||||||| ||||||| || ||||| ||||
Sbjct: 1115 ttccaactagggagagttactttgtaaggtactgtaagcaacatgccgaagggacttggg 1174
Query: 318 cagtggttgatgtttcattggacaatttgcgcccta 353
|||| ||||||||||| ||||||||||| |||||||
Sbjct: 1175 cagttgttgatgtttccttggacaatttacgcccta 1210
Score = 119 bits (60), Expect = 4e-26
Identities = 351/448 (78%)
Strand = Plus / Plus
Query: 610 catggacaacattatctgcaacaggttctgatgatgttagggtcatgacaagaaagagta 669
||||||||||| |||| | ||| || |||||||||| ||||| |||||| |||| |||
Sbjct: 1553 catggacaacactatcaggaactggggctgatgatgtaagggtgatgacacgaaaaagtg 1612
Query: 670 tggacgatcctggcaggcctcctggtattgtacttagcgcagcaacttctttctggattc 729
|||| |||||||| || || || || ||||| ||||| || |||||||| |||||| |||
Sbjct: 1613 tggatgatcctgggagacccccagggattgtgcttagtgctgcaacttccttctggcttc 1672
Query: 730 cagttcctcctaagaaagtatttgagttcctaagtgatgagaatcatcgaagcgagtggg 789
||||||| || || | || ||||| || || |||| ||||| ||||| ||||||
Sbjct: 1673 cagttccaccaaaaagggtttttgattttcttcgtgacgagaactctcgaaatcagtggg 1732
Query: 790 atatcctttcaaatggtggccaagttcaagaaatggctcacattgctaatggacgcgatc 849
|||| || || ||||| || || ||||||||||| |||||||||||||| | |||
Sbjct: 1733 atattctatcgaatggcggggttgtccaagaaatggcacacattgctaatggcagggata 1792
Query: 850 caggaaactatgtttctttgctccgtgtgaatagtgcaaattcaagccaaagcaacatgc 909
||||||||| ||| ||| | || || || |||||||| ||||| ||||| ||||||||||
Sbjct: 1793 caggaaactgtgtgtctcttcttcgagtaaatagtgcgaattcgagccagagcaacatgc 1852
Query: 910 tgatactacaagagagctgcacagactctactggatcgtatgtcatatatgcaccagtag 969
|||| | |||||||| |||||||| | || | || | |||||| ||||| || || |
Sbjct: 1853 tgattttgcaagagagttgcacagatccaacagcctcttttgtcatctatgcgcctgttg 1912
Query: 970 acattgcagcaatgaatatagtgctgagtggaggagacccagattatgtagctctccttc 1029
|||| | || |||||| | || || | ||| || || ||||||||||||||||| || |
Sbjct: 1913 acatcgtcgcgatgaatgtggttcttaatggtggggatccagattatgtagctcttctcc 1972
Query: 1030 catcaggttttgctatacttcctgatgg 1057
| ||||| ||||| || |||||||||||
Sbjct: 1973 cctcaggatttgccattcttcctgatgg 2000
>30171.m000424 Homeobox protein GLABRA2, putative
Length = 1641
Score = 52.0 bits (26), Expect = 8e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 902 caacatgctgatactacaagagagctgcacagac 935
|||||||||||| || ||||||||||||||||||
Sbjct: 1260 caacatgctgatgcttcaagagagctgcacagac 1293