Jatropha Genome Database
- JcCB0085591.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0085591.10 - phase: 0 /partial
(549 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29776.m000469 Charged multivesicular body protein 2b-B, putative 710 0.0
28492.m000477 Charged multivesicular body protein 2a, putative 84 1e-15
>29776.m000469 Charged multivesicular body protein 2b-B, putative
Length = 1218
Score = 710 bits (358), Expect = 0.0
Identities = 498/543 (91%), Gaps = 5/543 (0%)
Strand = Plus / Plus
Query: 1 atgctctccgggccagcaagagagaaatggctgttgccaccagaggtattgagcgggaaa 60
|||||||| || |||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 35 atgctctcaggaccagcaagagagaaatggctgttgccaccagaggtattgaacgtgaaa 94
Query: 61 ttgcatctcttcaattggaggtatgaaaagaaattagtcgcagagatcaagcaaacagct 120
|||||||||||||| | |||| ||||||||||||| |||||||||||||||||||||
Sbjct: 95 ttgcatctcttcaactagagg----aaaagaaattagtggcagagatcaagcaaacagct 150
Query: 121 aaaactggaaatgaggctgccaccaagatcttagcacgtcaacttgttcggctacggcaa 180
|||||||||||||||||||| || || ||||||||||| ||||| |||||||||||||||
Sbjct: 151 aaaactggaaatgaggctgctactaaaatcttagcacgacaactggttcggctacggcaa 210
Query: 181 cagataacaaatttgcagggtagtcgtgcccaaattagaggtgtagctactcatacacag 240
|| |||||||| || |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 211 caaataacaaacttacagggtagtcgtgcccaaatcagaggtgtagctactcatacacag 270
Query: 241 gcactgtatgctagtacttcaatttctacagggatgaaaggtgcaactaaggcaatggtg 300
|| || || || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 gctctatacgccagtacttcaatttctacagggatgaaaggtgcaactaaggcaatggta 330
Query: 301 gcaatgaacaagcaaatggctccaacaaaacaagctaaagtaataaaagagttccagaag 360
||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||
Sbjct: 331 gcaatgaacaagcaaatggctcctacaaaacaagttaaagtaataaaagaattccagaag 390
Query: 361 cagtcagcacaaatggacatgacgattgagatgatgtcagaatccattgatgaaacttta 420
|||||||||||| ||||||||||||||||||||||||| || | || ||||||||||||
Sbjct: 391 cagtcagcacaattggacatgacgattgagatgatgtcggaggctatcgatgaaacttta 450
Query: 421 gacaaagatgaggctgaagaagaaacagaggagcttactaaccaggtgctcgatgaaatt 480
|||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| |||
Sbjct: 451 gacaaagatgaggctgaagaggaaacagaggaacttactaaccaggtgcttgatgagatt 510
Query: 481 ggtgtaggcattgcatctcagttatcttcagctccaaagggtc-aattgcagcgaagaat 539
|| || | ||||||||||||||||||||||||||||||||| | ||||||| | ||||||
Sbjct: 511 ggcgttgacattgcatctcagttatcttcagctccaaagggccgaattgcatcaaagaat 570
Query: 540 gct 542
|||
Sbjct: 571 gct 573
>28492.m000477 Charged multivesicular body protein 2a, putative
Length = 639
Score = 83.8 bits (42), Expect = 1e-15
Identities = 189/238 (79%)
Strand = Plus / Plus
Query: 176 ggcaacagataacaaatttgcagggtagtcgtgcccaaattagaggtgtagctactcata 235
||||||| ||| | ||||| || ||||||||||| ||||| ||||| |||| |||||||
Sbjct: 206 ggcaacaaatagctaatttacaaggtagtcgtgctcaaataagaggcatagcaactcata 265
Query: 236 cacaggcactgtatgctagtacttcaatttctacagggatgaaaggtgcaactaaggcaa 295
|||||||| || |||| ||||| || || || |||||||||| || |||||||
Sbjct: 266 cacaggcaatgcatgcccaatcttcagttgctgttggtttgaaaggtgccacaaaggcaa 325
Query: 296 tggtggcaatgaacaagcaaatggctccaacaaaacaagctaaagtaataaaagagttcc 355
||| | ||||| |||||||||||||| |||| |||||| | || |||| ||| || |
Sbjct: 326 tggcttctatgaataagcaaatggctcctgcaaagcaagctcaggttataagagaatttc 385
Query: 356 agaagcagtcagcacaaatggacatgacgattgagatgatgtcagaatccattgatga 413
||||||||||||| || ||||| ||||| | || |||||||||||| |||| |||||
Sbjct: 386 agaagcagtcagcccagatggatatgactacggaaatgatgtcagaagccatagatga 443