Jatropha Genome Database

JcCB0084921.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0084921.10 - phase: 1 /pseudo
         (1171 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29980.m000183 tryptophan synthase beta chain, putative                424   e-118

>29980.m000183 tryptophan synthase beta chain, putative
          Length = 639

 Score =  424 bits (214), Expect = e-118
 Identities = 424/494 (85%)
 Strand = Plus / Plus

                                                                       
Query: 58  tttcaaatgggtttagagcaagagtaaaagctatttcaaatgctaatctgaaagcaattg 117
           ||||||||||  |||||||||||| ||||||   ||  |||||| ||| |||||||||| 
Sbjct: 128 tttcaaatggacttagagcaagagcaaaagcctctttgaatgctgatcagaaagcaattc 187

                                                                       
Query: 118 aaattccagaaaaatggtataatctaattgctgatcttcctataaaacctcctcctccat 177
           |||||||     | ||||| |||||  || | ||||||||| |||||||||||||  || 
Sbjct: 188 aaattcctcgtcagtggtacaatcttgtttcagatcttcctgtaaaacctcctcccgcac 247

                                                                       
Query: 178 tgcatcctaaaacttttgaacctgtcaaacctgaagatttagccccactctttccagatg 237
           || |||||||||||  |||||| |||||||| || |||||||| || |||||||| ||||
Sbjct: 248 tgaatcctaaaactcatgaaccagtcaaaccagaggatttagcgcctctctttcctgatg 307

                                                                       
Query: 238 agttgattaagcaagaagcgacgaatgaaaagttcatagatatcccagaacaagttcttg 297
           | ||||| ||||| ||||| |  |||||||| || ||||||||||||||| |||||||||
Sbjct: 308 aattgatcaagcaggaagcaagcaatgaaaaatttatagatatcccagaagaagttcttg 367

                                                                       
Query: 298 acatttacaagctttggcgcccaactcctttgattagggcaaagagattggagaaacttc 357
           |||||||| |||||||||||||||| || ||||||||||| |||||||||||||||||||
Sbjct: 368 acatttacgagctttggcgcccaacgcccttgattagggccaagagattggagaaacttc 427

                                                                       
Query: 358 tcgatacaccagctaaaatttactacaaatatgaaggtgttagccctgctggatcacaca 417
           | || |||||||| ||||| ||||| |||||||||||||| ||||| |||||||||||||
Sbjct: 428 ttgacacaccagcaaaaatctactataaatatgaaggtgtgagcccagctggatcacaca 487

                                                                       
Query: 418 agcctaacacagcagtcccacaagtcttttataatgcgcagcaaggtatcaagaatcttg 477
           | || ||||| ||||||||||| || || || ||||| || ||||| ||||||||| |||
Sbjct: 488 aacccaacactgcagtcccacaggtgttctacaatgcacaacaaggcatcaagaatgttg 547

                                                                       
Query: 478 tgacagaaacaggtgctggtcaatggggatgttcactggcctttgcttgcagcttatttg 537
           |||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 548 tgacagaaactggtgctggccaatggggaagttcactggcctttgcttgcagcttatttg 607

                         
Query: 538 gtcttggctgtgag 551
           ||||||| ||||||
Sbjct: 608 gtcttgggtgtgag 621